IGVFFI9416QOPQ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/index-files/IGVFFI9416QOPQ/",
4    "@type": [
5        "IndexFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9416QOPQ",
10    "aliases": [
11        "ansuman-satpathy:igvf16_fragments_index_10x3"
12    ],
13    "analysis_step_version": "/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011972/",
20        "component": "functional characterization"
21    },
22    "checkfiles_version": "v17",
23    "content_md5sum": "bce59f484b891a721496e19deb334a7b",
24    "content_type": "index",
25    "controlled_access": true,
26    "creation_timestamp": "2025-02-14T23:07:31.699003+00:00",
27    "derived_from": [
28        "/tabular-files/IGVFFI9091HPCI/"
29    ],
30    "file_format": "tbi",
31    "file_set": {
32        "@id": "/analysis-sets/IGVFDS9825AFPQ/",
33        "@type": [
34            "AnalysisSet",
35            "FileSet",
36            "Item"
37        ],
38        "accession": "IGVFDS9825AFPQ",
39        "file_set_type": "intermediate analysis",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM5332SKYG/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM5332SKYG",
49                "classifications": [
50                    "differentiated cell specimen",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [],
54                "modifications": [],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/EFO_0004905/",
58                        "status": "released",
59                        "term_name": "induced pluripotent stem cell"
60                    }
61                ],
62                "status": "released",
63                "summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
64                "taxa": "Homo sapiens",
65                "treatments": []
66            }
67        ],
68        "status": "released",
69        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
70    },
71    "file_size": 1781293,
72    "gene_list_for": [],
73    "href": "/index-files/IGVFFI9416QOPQ/@@download/IGVFFI9416QOPQ.tbi",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/ansuman-satpathy/",
78        "title": "Ansuman Satpathy, Stanford"
79    },
80    "loci_list_for": [],
81    "md5sum": "838b91736f172d4249d4bd99076311bc",
82    "quality_metrics": [],
83    "release_timestamp": "2025-03-22T00:44:27.164241+00:00",
84    "s3_uri": "s3://igvf-restricted-files/2025/02/14/eec27499-0c7e-49a9-98c6-5a4f117a42b4/IGVFFI9416QOPQ.tbi",
85    "schema_version": "1",
86    "status": "released",
87    "submitted_by": {
88        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
89        "title": "Christopher Mcginnis"
90    },
91    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf16/e16l3_fragments.tsv.gz.tbi",
92    "summary": "index of IGVFFI9091HPCI",
93    "upload_status": "validated",
94    "uuid": "eec27499-0c7e-49a9-98c6-5a4f117a42b4",
95    "workflow": {
96        "@id": "/workflows/IGVFWF1453HVEC/",
97        "name": "Satpathy Cell Ranger",
98        "uniform_pipeline": false
99    }
100}