IGVFFI8732KRQE

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/index-files/IGVFFI8732KRQE/",
4    "@type": [
5        "IndexFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8732KRQE",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS8415FVDT_bam_index"
12    ],
13    "analysis_step_version": "/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "assembly": "GRCm39",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011986/",
21        "component": "mapping"
22    },
23    "checkfiles_version": "v20",
24    "content_type": "index",
25    "controlled_access": false,
26    "creation_timestamp": "2025-03-27T04:39:56.222648+00:00",
27    "derived_from": [
28        "/alignment-files/IGVFFI9954EGHG/"
29    ],
30    "file_format": "bai",
31    "file_set": {
32        "@id": "/analysis-sets/IGVFDS8415FVDT/",
33        "@type": [
34            "AnalysisSet",
35            "FileSet",
36            "Item"
37        ],
38        "accession": "IGVFDS8415FVDT",
39        "data_use_limitation_summaries": [
40            "no certificate"
41        ],
42        "file_set_type": "intermediate analysis",
43        "samples": [
44            {
45                "@id": "/tissues/IGVFSM3932SXVT/",
46                "@type": [
47                    "Tissue",
48                    "Biosample",
49                    "Sample",
50                    "Item"
51                ],
52                "accession": "IGVFSM3932SXVT",
53                "classifications": [
54                    "tissue"
55                ],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/UBERON_0000955/",
59                        "status": "released",
60                        "term_name": "brain"
61                    }
62                ],
63                "status": "released",
64                "summary": "Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)",
65                "taxa": "Mus musculus"
66            }
67        ],
68        "status": "released",
69        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
70    },
71    "file_size": 2240520,
72    "filtered": false,
73    "gene_list_for": [],
74    "href": "/index-files/IGVFFI8732KRQE/@@download/IGVFFI8732KRQE.bai",
75    "input_file_for": [],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/jason-buenrostro/",
79        "title": "Jason Buenrostro, Broad"
80    },
81    "loci_list_for": [],
82    "md5sum": "cfc38cc66c1249c598fefb8a177fbc96",
83    "quality_metrics": [],
84    "redacted": false,
85    "release_timestamp": "2025-05-07T20:34:55.541243+00:00",
86    "s3_uri": "s3://igvf-files/2025/03/27/79bdafe3-bca4-430b-a2e5-b4a7d9a384be/IGVFFI8732KRQE.bai",
87    "schema_version": "1",
88    "status": "released",
89    "submitted_by": {
90        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
91        "title": "Siddarth Wekhande"
92    },
93    "submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/03d491e0-13b3-4b9d-89ce-ae4ebc4c6939/samtools_index_workflow/f4ccd091-38bd-48e0-b9e9-2ae33f1172d4/call-samtools_index/cacheCopy/SS-PKR-129.bam.bai",
94    "summary": "index of IGVFFI9954EGHG",
95    "upload_status": "validated",
96    "uuid": "79bdafe3-bca4-430b-a2e5-b4a7d9a384be",
97    "workflow": {
98        "@id": "/workflows/IGVFWF7365VWQV/",
99        "name": "igvf single cell uniform pipeline",
100        "uniform_pipeline": true
101    }
102}