IGVFFI7767NMQS

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/index-files/IGVFFI7767NMQS/",
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5        "IndexFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI7767NMQS",
10    "aliases": [
11        "ansuman-satpathy:igvf13_fragments_index_10x2"
12    ],
13    "analysis_step_version": "/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011972/",
20        "component": "functional characterization"
21    },
22    "checkfiles_version": "v17",
23    "content_md5sum": "c3b1d32fd643b3ca5a039d3bc5a85035",
24    "content_type": "index",
25    "controlled_access": true,
26    "creation_timestamp": "2025-01-28T15:29:10.062870+00:00",
27    "derived_from": [
28        "/tabular-files/IGVFFI9484EEZH/"
29    ],
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32        "@id": "/analysis-sets/IGVFDS0226SGHL/",
33        "@type": [
34            "AnalysisSet",
35            "FileSet",
36            "Item"
37        ],
38        "accession": "IGVFDS0226SGHL",
39        "file_set_type": "intermediate analysis",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM7106DAZZ/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM7106DAZZ",
49                "classifications": [
50                    "tissue",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [
54                    {
55                        "@id": "/phenotype-terms/MONDO_0005010/",
56                        "@type": [
57                            "PhenotypeTerm",
58                            "OntologyTerm",
59                            "Item"
60                        ],
61                        "status": "released",
62                        "summary": "coronary artery disorder",
63                        "term_name": "coronary artery disorder"
64                    }
65                ],
66                "modifications": [],
67                "sample_terms": [
68                    {
69                        "@id": "/sample-terms/UBERON_0001626/",
70                        "status": "released",
71                        "term_name": "left coronary artery"
72                    }
73                ],
74                "status": "released",
75                "summary": "multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples",
76                "taxa": "Homo sapiens",
77                "treatments": []
78            }
79        ],
80        "status": "released",
81        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
82    },
83    "file_size": 1538202,
84    "gene_list_for": [],
85    "href": "/index-files/IGVFFI7767NMQS/@@download/IGVFFI7767NMQS.tbi",
86    "input_file_for": [],
87    "integrated_in": [],
88    "lab": {
89        "@id": "/labs/ansuman-satpathy/",
90        "title": "Ansuman Satpathy, Stanford"
91    },
92    "loci_list_for": [],
93    "md5sum": "3d9a14259883c7d123693319233b927c",
94    "quality_metrics": [],
95    "release_timestamp": "2025-03-22T00:43:57.067511+00:00",
96    "s3_uri": "s3://igvf-restricted-files/2025/01/28/e7c2743c-8a85-4823-a222-d7b6519bcfe8/IGVFFI7767NMQS.tbi",
97    "schema_version": "1",
98    "status": "released",
99    "submitted_by": {
100        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
101        "title": "Christopher Mcginnis"
102    },
103    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf13/e13l2_fragments.tsv.gz.tbi",
104    "summary": "index of IGVFFI9484EEZH",
105    "upload_status": "validated",
106    "uuid": "e7c2743c-8a85-4823-a222-d7b6519bcfe8",
107    "workflow": {
108        "@id": "/workflows/IGVFWF1453HVEC/",
109        "name": "Satpathy Cell Ranger",
110        "uniform_pipeline": false
111    }
112}