{
"@context": "/terms/",
"@id": "/index-files/IGVFFI7584MFEP/",
"@type": [
"IndexFile",
"File",
"Item"
],
"accession": "IGVFFI7584MFEP",
"aliases": [
"buenrostro-bernstein:IGVFDS4147RERW_fragment_index"
],
"analysis_step_version": "/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/",
"assay_titles": [
"SHARE-seq"
],
"assembly": "GRCm39",
"audit": {},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "c6199d6c637d3bd687c5f7233304cfe0",
"content_type": "index",
"controlled_access": false,
"creation_timestamp": "2025-03-27T01:21:00.621347+00:00",
"derived_from": [
"/tabular-files/IGVFFI9362JSBS/"
],
"file_format": "tbi",
"file_set": {
"@id": "/analysis-sets/IGVFDS4147RERW/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4147RERW",
"data_use_limitation_summaries": [
"no certificate"
],
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/tissues/IGVFSM9781HISX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9781HISX",
"classifications": [
"tissue"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000955/",
"status": "released",
"term_name": "brain"
}
],
"status": "released",
"summary": "Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)",
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
},
"file_size": 690737,
"filtered": false,
"gene_list_for": [],
"href": "/index-files/IGVFFI7584MFEP/@@download/IGVFFI7584MFEP.tbi",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"loci_list_for": [],
"md5sum": "041aecbdebab6099ecb708949d3fb0ea",
"quality_metrics": [],
"release_timestamp": "2025-05-07T20:35:09.509440+00:00",
"s3_uri": "s3://igvf-files/2025/03/27/f73c506a-6040-4554-a313-adb437c3c149/IGVFFI7584MFEP.tbi",
"schema_version": "1",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/67efe196-b6fa-4d32-adf0-323869bb96b7/call-atac/wf_atac/ab98e91d-a104-4f77-b7d9-4a764546d96e/call-generate_fragments/SS-PKR-131.fragments.tsv.gz.tbi",
"summary": "index of IGVFFI9362JSBS",
"upload_status": "validated",
"uuid": "f73c506a-6040-4554-a313-adb437c3c149",
"workflow": {
"@id": "/workflows/IGVFWF7365VWQV/",
"name": "igvf single cell uniform pipeline",
"uniform_pipeline": true
}
}