IGVFFI6822VPWM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/index-files/IGVFFI6822VPWM/",
4    "@type": [
5        "IndexFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6822VPWM",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS2500WRRQ_fragment_index"
12    ],
13    "analysis_step_version": "/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "assembly": "GRCm39",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011986/",
21        "component": "mapping"
22    },
23    "checkfiles_version": "v20",
24    "content_md5sum": "ff0d217a4a99fc821a858e5e1eedad97",
25    "content_type": "index",
26    "controlled_access": false,
27    "creation_timestamp": "2025-03-27T01:21:19.727197+00:00",
28    "derived_from": [
29        "/tabular-files/IGVFFI5042DAMZ/"
30    ],
31    "file_format": "tbi",
32    "file_set": {
33        "@id": "/analysis-sets/IGVFDS2500WRRQ/",
34        "@type": [
35            "AnalysisSet",
36            "FileSet",
37            "Item"
38        ],
39        "accession": "IGVFDS2500WRRQ",
40        "data_use_limitation_summaries": [
41            "no certificate"
42        ],
43        "file_set_type": "intermediate analysis",
44        "samples": [
45            {
46                "@id": "/tissues/IGVFSM9503WHHQ/",
47                "@type": [
48                    "Tissue",
49                    "Biosample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM9503WHHQ",
54                "classifications": [
55                    "tissue"
56                ],
57                "sample_terms": [
58                    {
59                        "@id": "/sample-terms/UBERON_0000955/",
60                        "status": "released",
61                        "term_name": "brain"
62                    }
63                ],
64                "status": "released",
65                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 433)",
66                "taxa": "Mus musculus"
67            }
68        ],
69        "status": "released",
70        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
71    },
72    "file_size": 856076,
73    "filtered": false,
74    "gene_list_for": [],
75    "href": "/index-files/IGVFFI6822VPWM/@@download/IGVFFI6822VPWM.tbi",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/jason-buenrostro/",
80        "title": "Jason Buenrostro, Broad"
81    },
82    "loci_list_for": [],
83    "md5sum": "48770c8a36daea963908f96fe9b2fe5e",
84    "quality_metrics": [],
85    "release_timestamp": "2025-05-07T20:35:07.415385+00:00",
86    "s3_uri": "s3://igvf-files/2025/03/27/a6c528fa-bb49-489d-ab37-71a531ccc489/IGVFFI6822VPWM.tbi",
87    "schema_version": "1",
88    "status": "released",
89    "submitted_by": {
90        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
91        "title": "Siddarth Wekhande"
92    },
93    "submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/37c6f33e-77c3-4424-9360-fe4be37474a2/call-atac/wf_atac/7a2fe1c0-7261-4735-aaa4-246d3f946892/call-generate_fragments/SS-PKR-433.fragments.tsv.gz.tbi",
94    "summary": "index of IGVFFI5042DAMZ",
95    "upload_status": "validated",
96    "uuid": "a6c528fa-bb49-489d-ab37-71a531ccc489",
97    "workflow": {
98        "@id": "/workflows/IGVFWF7365VWQV/",
99        "name": "igvf single cell uniform pipeline",
100        "uniform_pipeline": true
101    }
102}