IGVFFI3527QKGP

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/index-files/IGVFFI3527QKGP/",
4    "@type": [
5        "IndexFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3527QKGP",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS4681TSQU_fragment_index"
12    ],
13    "analysis_step_version": "/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "assembly": "GRCm39",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011986/",
21        "component": "mapping"
22    },
23    "checkfiles_version": "v20",
24    "content_md5sum": "fa648320d19bffeff68bdcaf27b72b03",
25    "content_type": "index",
26    "controlled_access": false,
27    "creation_timestamp": "2025-03-27T01:21:51.304632+00:00",
28    "derived_from": [
29        "/tabular-files/IGVFFI6974VPAB/"
30    ],
31    "derived_manually": false,
32    "file_format": "tbi",
33    "file_set": {
34        "@id": "/analysis-sets/IGVFDS4681TSQU/",
35        "@type": [
36            "AnalysisSet",
37            "FileSet",
38            "Item"
39        ],
40        "accession": "IGVFDS4681TSQU",
41        "data_use_limitation_summaries": [
42            "no certificate"
43        ],
44        "file_set_type": "intermediate analysis",
45        "samples": [
46            {
47                "@id": "/tissues/IGVFSM4121TWUU/",
48                "@type": [
49                    "Tissue",
50                    "Biosample",
51                    "Sample",
52                    "Item"
53                ],
54                "accession": "IGVFSM4121TWUU",
55                "classifications": [
56                    "tissue"
57                ],
58                "sample_terms": [
59                    {
60                        "@id": "/sample-terms/UBERON_0000955/",
61                        "status": "released",
62                        "term_name": "brain"
63                    }
64                ],
65                "status": "released",
66                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 435)",
67                "taxa": "Mus musculus"
68            }
69        ],
70        "status": "released",
71        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
72    },
73    "file_size": 863212,
74    "filtered": false,
75    "gene_list_for": [],
76    "href": "/index-files/IGVFFI3527QKGP/@@download/IGVFFI3527QKGP.tbi",
77    "input_file_for": [],
78    "integrated_in": [],
79    "lab": {
80        "@id": "/labs/jason-buenrostro/",
81        "title": "Jason Buenrostro, Broad"
82    },
83    "loci_list_for": [],
84    "md5sum": "430f03da83f3e7c0b3f2e16d2e13f604",
85    "quality_metrics": [],
86    "release_timestamp": "2025-05-07T20:35:08.511962+00:00",
87    "s3_uri": "s3://igvf-files/2025/03/27/f2ae609a-ffca-4893-bd37-c6a8b710f647/IGVFFI3527QKGP.tbi",
88    "schema_version": "2",
89    "status": "released",
90    "submitted_by": {
91        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
92        "title": "Siddarth Wekhande"
93    },
94    "submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/dbe66b20-ce01-402b-bd70-5e9d0d878ab2/call-atac/wf_atac/a6e03b09-d082-40d3-8444-783f3819e0a5/call-generate_fragments/SS-PKR-435.fragments.tsv.gz.tbi",
95    "summary": "index of IGVFFI6974VPAB",
96    "upload_status": "validated",
97    "uuid": "f2ae609a-ffca-4893-bd37-c6a8b710f647",
98    "workflow": {
99        "@id": "/workflows/IGVFWF7365VWQV/",
100        "name": "igvf single cell uniform pipeline",
101        "uniform_pipeline": true
102    }
103}