IGVFFI0917ETKY

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/index-files/IGVFFI0917ETKY/",
4    "@type": [
5        "IndexFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0917ETKY",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS4769QTGM_fragment_index"
12    ],
13    "analysis_step_version": "/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "assembly": "GRCm39",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011986/",
21        "component": "mapping"
22    },
23    "checkfiles_version": "v20",
24    "content_md5sum": "9b5c47dd25a063a5d66996e15deaf54c",
25    "content_type": "index",
26    "controlled_access": false,
27    "creation_timestamp": "2025-03-27T01:21:06.351989+00:00",
28    "derived_from": [
29        "/tabular-files/IGVFFI6914SBPN/"
30    ],
31    "file_format": "tbi",
32    "file_set": {
33        "@id": "/analysis-sets/IGVFDS4769QTGM/",
34        "@type": [
35            "AnalysisSet",
36            "FileSet",
37            "Item"
38        ],
39        "accession": "IGVFDS4769QTGM",
40        "data_use_limitation_summaries": [
41            "no certificate"
42        ],
43        "file_set_type": "intermediate analysis",
44        "samples": [
45            {
46                "@id": "/tissues/IGVFSM8883WYCA/",
47                "@type": [
48                    "Tissue",
49                    "Biosample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM8883WYCA",
54                "classifications": [
55                    "tissue"
56                ],
57                "sample_terms": [
58                    {
59                        "@id": "/sample-terms/UBERON_0000955/",
60                        "status": "released",
61                        "term_name": "brain"
62                    }
63                ],
64                "status": "released",
65                "summary": "Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)",
66                "taxa": "Mus musculus"
67            }
68        ],
69        "status": "released",
70        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
71    },
72    "file_size": 679653,
73    "filtered": false,
74    "gene_list_for": [],
75    "href": "/index-files/IGVFFI0917ETKY/@@download/IGVFFI0917ETKY.tbi",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/jason-buenrostro/",
80        "title": "Jason Buenrostro, Broad"
81    },
82    "loci_list_for": [],
83    "md5sum": "0924babedab5ab22e40e6770c4798cf5",
84    "quality_metrics": [],
85    "release_timestamp": "2025-05-07T20:35:02.123142+00:00",
86    "s3_uri": "s3://igvf-files/2025/03/27/5da6809a-d640-4204-87f6-defc98114006/IGVFFI0917ETKY.tbi",
87    "schema_version": "1",
88    "status": "released",
89    "submitted_by": {
90        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
91        "title": "Siddarth Wekhande"
92    },
93    "submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/e5388b35-8930-49ab-a59f-e57e72b28278/call-atac/wf_atac/60c7c6a3-129f-4fff-90da-9ddb46c5b409/call-generate_fragments/SS-PKR-132.fragments.tsv.gz.tbi",
94    "summary": "index of IGVFFI6914SBPN",
95    "upload_status": "validated",
96    "uuid": "5da6809a-d640-4204-87f6-defc98114006",
97    "workflow": {
98        "@id": "/workflows/IGVFWF7365VWQV/",
99        "name": "igvf single cell uniform pipeline",
100        "uniform_pipeline": true
101    }
102}