IGVFFI0803IASQ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/index-files/IGVFFI0803IASQ/",
4    "@type": [
5        "IndexFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0803IASQ",
10    "aliases": [
11        "ansuman-satpathy:igvf12_fragments_index_10x3"
12    ],
13    "analysis_step_version": "/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011972/",
20        "component": "functional characterization"
21    },
22    "checkfiles_version": "v17",
23    "content_md5sum": "5eb981f1e80cba2b345ff5a049993ef2",
24    "content_type": "index",
25    "controlled_access": true,
26    "creation_timestamp": "2025-01-28T15:28:44.981305+00:00",
27    "derived_from": [
28        "/tabular-files/IGVFFI3421TIBT/"
29    ],
30    "file_format": "tbi",
31    "file_set": {
32        "@id": "/analysis-sets/IGVFDS3005LSBM/",
33        "@type": [
34            "AnalysisSet",
35            "FileSet",
36            "Item"
37        ],
38        "accession": "IGVFDS3005LSBM",
39        "file_set_type": "intermediate analysis",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM7114MTSH/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM7114MTSH",
49                "classifications": [
50                    "differentiated cell specimen",
51                    "tissue",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/CL_0000236/",
59                        "status": "released",
60                        "term_name": "B cell"
61                    },
62                    {
63                        "@id": "/sample-terms/UBERON_0002371/",
64                        "status": "released",
65                        "term_name": "bone marrow"
66                    }
67                ],
68                "status": "released",
69                "summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
70                "taxa": "Homo sapiens",
71                "treatments": []
72            }
73        ],
74        "status": "released",
75        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
76    },
77    "file_size": 1697457,
78    "gene_list_for": [],
79    "href": "/index-files/IGVFFI0803IASQ/@@download/IGVFFI0803IASQ.tbi",
80    "input_file_for": [],
81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/ansuman-satpathy/",
84        "title": "Ansuman Satpathy, Stanford"
85    },
86    "loci_list_for": [],
87    "md5sum": "0dfb5a9e670147a212a3282a1c1271ea",
88    "quality_metrics": [],
89    "release_timestamp": "2025-03-22T00:43:16.934488+00:00",
90    "s3_uri": "s3://igvf-restricted-files/2025/01/28/0ed33217-ce43-455d-ae45-59fe1b5d97b6/IGVFFI0803IASQ.tbi",
91    "schema_version": "1",
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
95        "title": "Christopher Mcginnis"
96    },
97    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l3_fragments.tsv.gz.tbi",
98    "summary": "index of IGVFFI3421TIBT",
99    "upload_status": "validated",
100    "uuid": "0ed33217-ce43-455d-ae45-59fe1b5d97b6",
101    "workflow": {
102        "@id": "/workflows/IGVFWF1453HVEC/",
103        "name": "Satpathy Cell Ranger",
104        "uniform_pipeline": false
105    }
106}