IGVFFI0347BCEG

released
validated
{
    "@context": "/terms/",
    "@id": "/index-files/IGVFFI0347BCEG/",
    "@type": [
        "IndexFile",
        "File",
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    "accession": "IGVFFI0347BCEG",
    "aliases": [
        "ansuman-satpathy:igvf11_fragments_index_10x3"
    ],
    "analysis_step_version": "/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "checkfiles_version": "v17",
    "content_md5sum": "c9da7df005391f61cff7202912a00583",
    "content_type": "index",
    "controlled_access": false,
    "creation_timestamp": "2025-01-28T15:28:32.735634+00:00",
    "derived_from": [
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    ],
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    "file_set": {
        "@id": "/analysis-sets/IGVFDS8136ENRY/",
        "accession": "IGVFDS8136ENRY",
        "file_set_type": "intermediate analysis",
        "samples": [
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                "@id": "/multiplexed-samples/IGVFSM9367PJMT/",
                "accession": "IGVFSM9367PJMT",
                "classifications": [
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                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
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                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            },
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                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
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                "taxa": "Homo sapiens",
                "treatments": []
            },
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                "sample_terms": [
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                        "status": "released",
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                        "status": "released",
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                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            },
            {
                "@id": "/multiplexed-samples/IGVFSM6160ZDRZ/",
                "accession": "IGVFSM6160ZDRZ",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
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                        "status": "released",
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                    },
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                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
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    "href": "/index-files/IGVFFI0347BCEG/@@download/IGVFFI0347BCEG.tbi",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
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    "loci_list_for": [],
    "md5sum": "e17683171da89b01fba5bf58eaf8fc05",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T06:05:07.238245+00:00",
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    "schema_version": "1",
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    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf11/e11l3_fragments.tsv.gz.tbi",
    "summary": "index of IGVFFI2578BIPG",
    "upload_status": "validated",
    "uuid": "522cb27a-8b4d-4097-b04e-01829390e6f3",
    "workflow": {
        "@id": "/workflows/IGVFWF1453HVEC/",
        "name": "Satpathy Cell Ranger",
        "uniform_pipeline": false
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}