Home

HCT116 — IGVFSM9983LVUX

released
Summary
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Sample Terms
Classification
cell line
Sex
male
Originated From Sample
IGVFSM5760JFFX
Age
unknown
Taxa
Homo sapiens
Sources
atcc
Aliases
jesse-engreitz:in-vitro-system_CRUDO_TAPseq-Auxin6hrs-Rep1

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

File Sets

3 items
degradation, interference TAP-seq: differential element quantifications, guide quantifications
  • jesse-engreitz:analysis_set_CRUDO_TAPseq
Jesse Engreitz, Stanford
gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
  • jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin6hrs-Rep1
Jesse Engreitz, Stanford
mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
  • jesse-engreitz:measurement_CRUDO_TAPseq-Auxin6hrs-Rep1
Jesse Engreitz, Stanford

Modifications

2 items
degradation
interference

Treatments

1 item
Term Name
Purpose
Type
Summary
activation
chemical
Treatment of 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours

Documents

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford