{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM9503LWJR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9503LWJR",
"age": "unknown",
"aliases": [
"ansuman-satpathy:hepg2_1"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"cell line"
],
"creation_timestamp": "2024-07-21T23:09:10.234506+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO2837BRET/",
"accession": "IGVFDO2837BRET",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4602PSGH/",
"accession": "IGVFDS4602PSGH",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2422JHIN/",
"accession": "IGVFDS2422JHIN",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS3579YOKV/",
"accession": "IGVFDS3579YOKV",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS9170BNTS/",
"accession": "IGVFDS9170BNTS",
"aliases": [
"ansuman-satpathy:igvf3_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS8466CGYE/",
"accession": "IGVFDS8466CGYE",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS0470ONXA/",
"accession": "IGVFDS0470ONXA",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4208ZWQY/",
"accession": "IGVFDS4208ZWQY",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2000OICT/",
"accession": "IGVFDS2000OICT",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5893VQJY/",
"accession": "IGVFDS5893VQJY",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS8334UDJX/",
"accession": "IGVFDS8334UDJX",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1983YORK/",
"accession": "IGVFDS1983YORK",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS5693MIIK/",
"accession": "IGVFDS5693MIIK",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1843ABDU/",
"accession": "IGVFDS1843ABDU",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
}
],
"growth_medium": "DMEM with serum",
"institutional_certificates": [
{
"@id": "/institutional-certificates/90b62a08-60dc-4932-8bf1-38769f07b362/",
"certificate_identifier": "IP115-06",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM8818QZOF/",
"accession": "IGVFSM8818QZOF",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM8265VEJP/",
"accession": "IGVFSM8265VEJP",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM4259POAT/",
"accession": "IGVFSM4259POAT",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM7454SJSO/",
"accession": "IGVFSM7454SJSO",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:10:50.003405+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
}
],
"schema_version": "25",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/richard-sherwood/",
"status": "current",
"title": "Richard Sherwood, Brigham and Women's Hospital"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "HepG2 cell line, male, Homo sapiens grown in DMEM with serum",
"taxa": "Homo sapiens",
"uuid": "748038ab-630e-4f5b-a398-3ac8e89efe1f",
"virtual": false
}