GM25256 (WTC-11) — IGVFSM9140ULKM

released
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM9140ULKM/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM9140ULKM",
11    "age": "unknown",
12    "aliases": [
13        "charles-gersbach:in-vitro-system-bulk-rna-chir4um-ipsc-cm-rep2"
14    ],
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "missing publication",
19                "detail": "In vitro system [IGVFSM9140ULKM](/in-vitro-systems/IGVFSM9140ULKM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_sample_missing_publication",
23                "path": "/in-vitro-systems/IGVFSM9140ULKM/"
24            }
25        ]
26    },
27    "award": {
28        "@id": "/awards/HG012053/",
29        "component": "functional characterization"
30    },
31    "cell_fate_change_protocol": "/documents/b705a1b0-8936-464e-84e1-c4d2b3df7711/",
32    "classifications": [
33        "differentiated cell specimen"
34    ],
35    "creation_timestamp": "2024-10-23T19:05:28.128410+00:00",
36    "demultiplexed_to": [],
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO1756PPKO/",
40            "accession": "IGVFDO1756PPKO",
41            "ethnicities": [
42                "Japanese"
43            ],
44            "status": "released"
45        }
46    ],
47    "file_sets": [
48        {
49            "@id": "/measurement-sets/IGVFDS6712YMBV/",
50            "accession": "IGVFDS6712YMBV",
51            "aliases": [
52                "charles-gersbach:measurement-set-bulk-rna-chir4um-ipsc-cm-rep2"
53            ],
54            "file_set_type": "experimental data",
55            "lab": {
56                "title": "Charles Gersbach, Duke"
57            },
58            "preferred_assay_title": "RNA-seq",
59            "status": "released",
60            "summary": "RNA-seq"
61        },
62        {
63            "@id": "/analysis-sets/IGVFDS3461ZPPS/",
64            "accession": "IGVFDS3461ZPPS",
65            "aliases": [
66                "charles-gersbach:analysis-set-bulk-rna-DEanalysis"
67            ],
68            "file_set_type": "principal analysis",
69            "lab": {
70                "title": "Charles Gersbach, Duke"
71            },
72            "status": "released",
73            "summary": "RNA-seq: fold change over control, transcript quantifications, transcriptome alignments"
74        }
75    ],
76    "institutional_certificates": [
77        {
78            "@id": "/institutional-certificates/a62cea9b-2ae0-44e8-a6d6-81f419c56c71/",
79            "certificate_identifier": "IP117-03",
80            "controlled_access": false,
81            "status": "released"
82        }
83    ],
84    "lab": {
85        "@id": "/labs/charles-gersbach/",
86        "title": "Charles Gersbach, Duke"
87    },
88    "multiplexed_in": [],
89    "origin_of": [],
90    "parts": [],
91    "pooled_in": [],
92    "release_timestamp": "2024-12-10T00:24:34.728709+00:00",
93    "sample_terms": [
94        {
95            "@id": "/sample-terms/EFO_0009747/",
96            "status": "released",
97            "term_name": "GM25256 (WTC-11)"
98        }
99    ],
100    "schema_version": "26",
101    "sex": "male",
102    "sorted_fractions": [],
103    "sources": [
104        {
105            "@id": "/labs/charles-gersbach/",
106            "status": "current",
107            "title": "Charles Gersbach, Duke"
108        }
109    ],
110    "status": "released",
111    "submitted_by": {
112        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
113        "title": "Ruhi Rai"
114    },
115    "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days",
116    "targeted_sample_term": {
117        "@id": "/sample-terms/CL_0000746/",
118        "status": "released",
119        "term_name": "cardiac muscle cell"
120    },
121    "taxa": "Homo sapiens",
122    "time_post_change": 28,
123    "time_post_change_units": "day",
124    "treatments": [
125        {
126            "@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
127            "depletion": false,
128            "purpose": "antagonist",
129            "status": "released",
130            "treatment_term_name": "GSK3 inhibition",
131            "treatment_type": "chemical"
132        }
133    ],
134    "uuid": "b522901f-810e-4d8a-979e-f7d8f8e50a44",
135    "virtual": false
136}