{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM9009DVDG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9009DVDG",
"age": "unknown",
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM9009DVDG](/in-vitro-systems/IGVFSM9009DVDG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM9009DVDG/"
},
{
"category": "missing publication",
"detail": "Construct library set [IGVFDS1589ODOW](/construct-library-sets/IGVFDS1589ODOW/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/construct-library-sets/IGVFDS1589ODOW/"
},
{
"category": "mismatched status",
"detail": "Released construct library set [IGVFDS1589ODOW](/construct-library-sets/IGVFDS1589ODOW/) has in progress subobject tabular file [IGVFFI7321WGMD](/tabular-files/IGVFFI7321WGMD/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/construct-library-sets/IGVFDS1589ODOW/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"classifications": [
"cell line",
"pooled cell specimen"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS1589ODOW/",
"accession": "IGVFDS1589ODOW",
"file_set_type": "reporter library",
"status": "released"
}
],
"creation_timestamp": "2024-03-21T11:01:55.523112+00:00",
"demultiplexed_to": [],
"description": "HepG2",
"donors": [
{
"@id": "/human-donors/IGVFDO2837BRET/",
"accession": "IGVFDO2837BRET",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS6271MTZX/",
"accession": "IGVFDS6271MTZX",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
},
{
"@id": "/measurement-sets/IGVFDS5846SFBO/",
"accession": "IGVFDS5846SFBO",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
},
{
"@id": "/measurement-sets/IGVFDS5476WHHS/",
"accession": "IGVFDS5476WHHS",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
},
{
"@id": "/analysis-sets/IGVFDS3278AFYF/",
"accession": "IGVFDS3278AFYF",
"file_set_type": "principal analysis",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"status": "released",
"summary": "lentiMPRA: reporter experiment, reporter experiment barcode"
},
{
"@id": "/analysis-sets/IGVFDS6149YGOL/",
"accession": "IGVFDS6149YGOL",
"file_set_type": "principal analysis",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"status": "in progress",
"summary": "lentiMPRA: reporter experiment, reporter experiment barcode"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/nadav-ahituv/",
"title": "Nadav Ahituv, UCSF"
},
"multiplexed_in": [],
"notes": "This object's classifications was previously pooled cell specimen. It has been upgraded to both cell line and pooled cell specimen classifications by an upgrade.",
"nucleic_acid_delivery": "lentiviral transduction",
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-01-30T17:47:26.428340+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
}
],
"schema_version": "26",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/nadav-ahituv/",
"status": "current",
"title": "Nadav Ahituv, UCSF"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/696ac72c-9846-469d-8bf1-8bd01856d4ba/",
"title": "Thorben Maass"
},
"summary": "Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library",
"taxa": "Homo sapiens",
"uuid": "55b6219f-42a7-4295-8b35-ce7228587969",
"virtual": false
}