{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM8815WPPO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8815WPPO",
"age": "unknown",
"aliases": [
"jay-shendure:CRISPRa_singletonvalidations_neurons_rep3"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released construct library set [IGVFDS9531XJKW](/construct-library-sets/IGVFDS9531XJKW/) has in progress subobject tabular file [IGVFFI9694NCRL](/tabular-files/IGVFFI9694NCRL/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/construct-library-sets/IGVFDS9531XJKW/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"cell_fate_change_protocol": "/documents/a9ab6aae-48a0-444a-a609-3addf65d3027/",
"classifications": [
"differentiated cell specimen"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS9531XJKW/",
"accession": "IGVFDS9531XJKW",
"file_set_type": "guide library",
"status": "released"
}
],
"creation_timestamp": "2024-10-17T21:27:18.854444+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"ethnicities": [
"Japanese"
],
"status": "released"
}
],
"embryonic": false,
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS6984YRQD/",
"accession": "IGVFDS6984YRQD",
"aliases": [
"jay-shendure:CRISPRa_singlevalidations_neurons_ASIC1_rep3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jay Shendure, UW"
},
"preferred_assay_title": "RNA-seq",
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
},
{
"@id": "/measurement-sets/IGVFDS6055OETT/",
"accession": "IGVFDS6055OETT",
"aliases": [
"jay-shendure:CRISPRa_singlevalidations_neurons_ANXA1_rep3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jay Shendure, UW"
},
"preferred_assay_title": "RNA-seq",
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
},
{
"@id": "/measurement-sets/IGVFDS2836HOGQ/",
"accession": "IGVFDS2836HOGQ",
"aliases": [
"jay-shendure:CRISPRa_singlevalidations_neurons_FOXP1_rep3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jay Shendure, UW"
},
"preferred_assay_title": "RNA-seq",
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
},
{
"@id": "/measurement-sets/IGVFDS8810QPIN/",
"accession": "IGVFDS8810QPIN",
"aliases": [
"jay-shendure:CRISPRa_singlevalidations_neurons_TCF4_rep3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jay Shendure, UW"
},
"preferred_assay_title": "RNA-seq",
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
},
{
"@id": "/measurement-sets/IGVFDS7514OHDB/",
"accession": "IGVFDS7514OHDB",
"aliases": [
"jay-shendure:CRISPRa_singlevalidations_neurons_BCL11A_rep3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jay Shendure, UW"
},
"preferred_assay_title": "RNA-seq",
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
},
{
"@id": "/measurement-sets/IGVFDS9381HGCT/",
"accession": "IGVFDS9381HGCT",
"aliases": [
"jay-shendure:CRISPRa_singlevalidations_neurons_HMGA1_rep3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jay Shendure, UW"
},
"preferred_assay_title": "RNA-seq",
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
},
{
"@id": "/measurement-sets/IGVFDS7278YUXS/",
"accession": "IGVFDS7278YUXS",
"aliases": [
"jay-shendure:CRISPRa_singlevalidations_neurons_DNMT3B_rep3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jay Shendure, UW"
},
"preferred_assay_title": "RNA-seq",
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
},
{
"@id": "/measurement-sets/IGVFDS6051JPJZ/",
"accession": "IGVFDS6051JPJZ",
"aliases": [
"jay-shendure:CRISPRa_singlevalidations_neurons_TBR1_rep3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jay Shendure, UW"
},
"preferred_assay_title": "RNA-seq",
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
},
{
"@id": "/analysis-sets/IGVFDS3251QBOZ/",
"accession": "IGVFDS3251QBOZ",
"aliases": [
"jay-shendure:analysis_set_singletonvalidation"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Jay Shendure, UW"
},
"status": "released",
"summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/7c742124-a7fa-4f13-9a62-4c7dfed4d289/",
"certificate_identifier": "IP118-01",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
}
],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"modifications": [
{
"@id": "/crispr-modifications/426a4099-35d9-4c65-8851-5e788a3d4e70/",
"cas": "dCas9",
"cas_species": "Streptococcus pyogenes (Sp)",
"fused_domain": "VPH",
"modality": "activation",
"status": "released",
"summary": "CRISPRa Sp-dCas9-VPH"
}
],
"multiplexed_in": [],
"nucleic_acid_delivery": "nucleofection",
"origin_of": [],
"parts": [],
"pooled_in": [],
"publications": [
{
"@id": "/publications/20fcbdbb-5a47-41c6-b80b-e6dd0e8a8d3e/",
"publication_identifiers": [
"doi:10.1038/s41467-024-52490-4"
],
"status": "released"
}
],
"release_timestamp": "2025-05-29T21:02:02.272677+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"schema_version": "28",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/martin-kampmann/",
"status": "released",
"title": "Martin Kampmann, UCSF"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
"title": "Beth Martin"
},
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000540/",
"status": "released",
"term_name": "neuron"
},
"taxa": "Homo sapiens",
"time_post_change": 19,
"time_post_change_units": "day",
"uuid": "5612e685-ce61-49be-94ff-4afe1e2e8180",
"virtual": false
}