{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM8521AYSS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8521AYSS",
"age": "unknown",
"aliases": [
"ansuman-satpathy:rues2_gastruloid_d0_1"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/443db47e-0000-4854-a670-5a493651f5d2/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2025-01-27T22:11:49.428801+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"file_sets": [
{
"@id": "/curated-sets/IGVFDS0732URTJ/",
"accession": "IGVFDS0732URTJ",
"aliases": [
"ansuman-satpathy:curated_set_barcode_map_igvf17"
],
"file_set_type": "barcodes",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "in progress",
"summary": "barcodes"
},
{
"@id": "/auxiliary-sets/IGVFDS0504BMLR/",
"accession": "IGVFDS0504BMLR",
"aliases": [
"ansuman-satpathy:multiseq_igvf17_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9970KYUU/",
"accession": "IGVFDS9970KYUU",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf17_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3953KNVA/",
"accession": "IGVFDS3953KNVA",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf17_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS0398ALPE/",
"accession": "IGVFDS0398ALPE",
"aliases": [
"ansuman-satpathy:igvf17_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS1850HDEG/",
"accession": "IGVFDS1850HDEG",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf17_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS7632NJZU/",
"accession": "IGVFDS7632NJZU",
"aliases": [
"ansuman-satpathy:multiseq_igvf17_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2170OFES/",
"accession": "IGVFDS2170OFES",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf17_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS5763YUNI/",
"accession": "IGVFDS5763YUNI",
"aliases": [
"ansuman-satpathy:multiseq_igvf17_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9133EBOD/",
"accession": "IGVFDS9133EBOD",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf17_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1381KOVA/",
"accession": "IGVFDS1381KOVA",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf17_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9737YNSX/",
"accession": "IGVFDS9737YNSX",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf17_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS7207IORB/",
"accession": "IGVFDS7207IORB",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf17_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS9924UIFT/",
"accession": "IGVFDS9924UIFT",
"aliases": [
"ansuman-satpathy:multiseq_igvf17_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS9074YQHT/",
"accession": "IGVFDS9074YQHT",
"aliases": [
"ansuman-satpathy:multiseq_igvf17_10x5"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5600JMON/",
"accession": "IGVFDS5600JMON",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf17_10x5"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5452GNYG/",
"accession": "IGVFDS5452GNYG",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf17_10x5"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/49ea766d-c6ef-4ced-be8c-4e3ba1693d31/",
"certificate_identifier": "IP115-24",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM7909ETQJ/",
"accession": "IGVFSM7909ETQJ",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM6345RLEH/",
"accession": "IGVFSM6345RLEH",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM9149ZACE/",
"accession": "IGVFSM9149ZACE",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM0198VBOA/",
"accession": "IGVFSM0198VBOA",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM8270UYGU/",
"accession": "IGVFSM8270UYGU",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM2230AWID/",
"accession": "IGVFSM2230AWID",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:16:37.918301+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"schema_version": "25",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jay-shendure/",
"status": "current",
"title": "Jay Shendure, UW"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "RUES2 differentiated cell specimen, female, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_00004734/",
"status": "released",
"term_name": "gastrula"
},
"taxa": "Homo sapiens",
"time_post_change": 0,
"time_post_change_units": "day",
"uuid": "e83da7ed-162a-41ca-b80a-243df6f375de",
"virtual": false
}