GM25256 (WTC-11) — IGVFSM8474ROKV

released
{
    "@context": "/terms/",
    "@id": "/in-vitro-systems/IGVFSM8474ROKV/",
    "@type": [
        "InVitroSystem",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "IGVFSM8474ROKV",
    "age": "unknown",
    "aliases": [
        "ansuman-satpathy:wtc11_cardio_d15_2"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "cell_fate_change_protocol": "/documents/37fa2e59-2576-47f2-b63f-aadc3276c1a6/",
    "classifications": [
        "differentiated cell specimen"
    ],
    "creation_timestamp": "2024-07-21T23:09:09.115138+00:00",
    "demultiplexed_to": [],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO1756PPKO/",
            "accession": "IGVFDO1756PPKO",
            "ethnicities": [
                "Japanese"
            ],
            "status": "released"
        }
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS4602PSGH/",
            "accession": "IGVFDS4602PSGH",
            "aliases": [
                "ansuman-satpathy:snRNA-seq_igvf3_10x2"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2422JHIN/",
            "accession": "IGVFDS2422JHIN",
            "aliases": [
                "ansuman-satpathy:snATAC-seq_igvf3_10x2"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/auxiliary-sets/IGVFDS3579YOKV/",
            "accession": "IGVFDS3579YOKV",
            "aliases": [
                "ansuman-satpathy:multiseq_igvf3_10x2"
            ],
            "file_set_type": "lipid-conjugated oligo sequencing",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/analysis-sets/IGVFDS9170BNTS/",
            "accession": "IGVFDS9170BNTS",
            "aliases": [
                "ansuman-satpathy:igvf3_analysis_set"
            ],
            "file_set_type": "intermediate analysis",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
        },
        {
            "@id": "/measurement-sets/IGVFDS8466CGYE/",
            "accession": "IGVFDS8466CGYE",
            "aliases": [
                "ansuman-satpathy:snATAC-seq_igvf3_10x4"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/auxiliary-sets/IGVFDS0470ONXA/",
            "accession": "IGVFDS0470ONXA",
            "aliases": [
                "ansuman-satpathy:multiseq_igvf3_10x4"
            ],
            "file_set_type": "lipid-conjugated oligo sequencing",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS4208ZWQY/",
            "accession": "IGVFDS4208ZWQY",
            "aliases": [
                "ansuman-satpathy:snRNA-seq_igvf3_10x4"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS2000OICT/",
            "accession": "IGVFDS2000OICT",
            "aliases": [
                "ansuman-satpathy:snRNA-seq_igvf3_10x1"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS5893VQJY/",
            "accession": "IGVFDS5893VQJY",
            "aliases": [
                "ansuman-satpathy:snATAC-seq_igvf3_10x1"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/auxiliary-sets/IGVFDS8334UDJX/",
            "accession": "IGVFDS8334UDJX",
            "aliases": [
                "ansuman-satpathy:multiseq_igvf3_10x1"
            ],
            "file_set_type": "lipid-conjugated oligo sequencing",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS1983YORK/",
            "accession": "IGVFDS1983YORK",
            "aliases": [
                "ansuman-satpathy:snRNA-seq_igvf3_10x3"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/auxiliary-sets/IGVFDS5693MIIK/",
            "accession": "IGVFDS5693MIIK",
            "aliases": [
                "ansuman-satpathy:multiseq_igvf3_10x3"
            ],
            "file_set_type": "lipid-conjugated oligo sequencing",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS1843ABDU/",
            "accession": "IGVFDS1843ABDU",
            "aliases": [
                "ansuman-satpathy:snATAC-seq_igvf3_10x3"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        }
    ],
    "institutional_certificates": [
        {
            "@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
            "certificate_identifier": "IP115-21",
            "controlled_access": false,
            "status": "released"
        }
    ],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "multiplexed_in": [
        {
            "@id": "/multiplexed-samples/IGVFSM8818QZOF/",
            "accession": "IGVFSM8818QZOF",
            "status": "released"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM8265VEJP/",
            "accession": "IGVFSM8265VEJP",
            "status": "released"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM4259POAT/",
            "accession": "IGVFSM4259POAT",
            "status": "released"
        },
        {
            "@id": "/multiplexed-samples/IGVFSM7454SJSO/",
            "accession": "IGVFSM7454SJSO",
            "status": "released"
        }
    ],
    "origin_of": [],
    "originated_from": {
        "@id": "/in-vitro-systems/IGVFSM5169IKMX/",
        "accession": "IGVFSM5169IKMX",
        "status": "released"
    },
    "parts": [],
    "pooled_in": [],
    "protocols": [
        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
    ],
    "release_timestamp": "2025-03-07T01:10:50.460646+00:00",
    "sample_terms": [
        {
            "@id": "/sample-terms/EFO_0009747/",
            "status": "released",
            "term_name": "GM25256 (WTC-11)"
        }
    ],
    "schema_version": "25",
    "sex": "male",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/lars-steinmetz/",
            "status": "current",
            "title": "Lars Steinmetz, Stanford"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 14 days, male, Homo sapiens",
    "targeted_sample_term": {
        "@id": "/sample-terms/CL_0000746/",
        "status": "released",
        "term_name": "cardiac muscle cell"
    },
    "taxa": "Homo sapiens",
    "time_post_change": 14,
    "time_post_change_units": "day",
    "uuid": "838b181b-fcf2-4caf-8bcf-cee745c5a332",
    "virtual": false
}