{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM8093SHHZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8093SHHZ",
"age": "33",
"age_units": "year",
"aliases": [
"harinder-singh:D012_Bcells_don1_pitt_multiome"
],
"audit": {},
"award": {
"@id": "/awards/HG012041/",
"component": "networks"
},
"cell_fate_change_protocol": "/documents/94d33267-3f2b-4493-84b3-6892427d2611/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2024-11-06T17:10:01.329411+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO9916UELD/",
"accession": "IGVFDO9916UELD",
"ethnicities": [
"African American"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS7859EYQR/",
"accession": "IGVFDS7859EYQR",
"aliases": [
"harinder-singh:Bcells_don1_pitt_multiome_scRNAseq_day012_measurement"
],
"file_set_type": "experimental data",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4024LHFB/",
"accession": "IGVFDS4024LHFB",
"aliases": [
"harinder-singh:Bcells_don1_pitt_multiome_scATACseq_day012_measurement"
],
"file_set_type": "experimental data",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS6517LKCX/",
"accession": "IGVFDS6517LKCX",
"aliases": [
"harinder-singh:AnalysisSet_measurement-don1_pitt_multiome_sc-uniform-pipeline"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS4340KVZI/",
"accession": "IGVFDS4340KVZI",
"aliases": [
"harinder-singh:Bcells_don1_pitt_multiome_day012_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS8424XWBB/",
"accession": "IGVFDS8424XWBB",
"aliases": [
"harinder-singh:Bcells_don1_pitt_multiome_aggr_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS3401CMEA/",
"accession": "IGVFDS3401CMEA",
"aliases": [
"harinder-singh:Bcells_don1_pitt_multiome_aggr_mira_analysis_set"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/4786e123-f40d-4b08-aa06-b5f35e9cc453/",
"certificate_identifier": "IP108-01",
"controlled_access": true,
"data_use_limitation": "HMB",
"data_use_limitation_summary": "HMB",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/harinder-singh/",
"title": "Harinder Singh, University of Pittsburgh"
},
"lower_bound_age": 33,
"lower_bound_age_in_hours": 289080,
"multiplexed_in": [],
"origin_of": [],
"originated_from": {
"@id": "/primary-cells/IGVFSM7892QIPY/",
"accession": "IGVFSM7892QIPY",
"status": "preview"
},
"parts": [],
"pooled_from": [
"/primary-cells/IGVFSM5255VAAQ/",
"/in-vitro-systems/IGVFSM1728VPDE/",
"/in-vitro-systems/IGVFSM8107EKMK/"
],
"pooled_in": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"schema_version": "27",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/stem-cell-technologies/",
"status": "released",
"title": "STEMCELL Technologies"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
"title": "Nicholas Pease"
},
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000980/",
"status": "released",
"term_name": "plasmablast"
},
"taxa": "Homo sapiens",
"time_post_change": 2,
"time_post_change_units": "day",
"upper_bound_age": 33,
"upper_bound_age_in_hours": 289080,
"uuid": "c6e5a32f-0f41-41a2-8efd-7cc2e2c0f80f",
"virtual": false
}