{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM8026MGEJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8026MGEJ",
"age": "unknown",
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8026MGEJ](/in-vitro-systems/IGVFSM8026MGEJ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8026MGEJ/"
},
{
"category": "missing publication",
"detail": "Construct library set [IGVFDS1589ODOW](/construct-library-sets/IGVFDS1589ODOW/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/construct-library-sets/IGVFDS1589ODOW/"
},
{
"category": "mismatched status",
"detail": "Released construct library set [IGVFDS1589ODOW](/construct-library-sets/IGVFDS1589ODOW/) has in progress subobject tabular file [IGVFFI7321WGMD](/tabular-files/IGVFFI7321WGMD/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/construct-library-sets/IGVFDS1589ODOW/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"classifications": [
"cell line",
"pooled cell specimen"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS1589ODOW/",
"accession": "IGVFDS1589ODOW",
"file_set_type": "reporter library",
"status": "released"
}
],
"creation_timestamp": "2024-03-21T11:02:48.237329+00:00",
"demultiplexed_to": [],
"description": "HEK293T",
"donors": [
{
"@id": "/human-donors/IGVFDO1183RRBM/",
"accession": "IGVFDO1183RRBM",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3972PWZA/",
"accession": "IGVFDS3972PWZA",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
},
{
"@id": "/measurement-sets/IGVFDS3908QZCZ/",
"accession": "IGVFDS3908QZCZ",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
},
{
"@id": "/measurement-sets/IGVFDS6025YVWB/",
"accession": "IGVFDS6025YVWB",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
},
{
"@id": "/analysis-sets/IGVFDS2308SBSR/",
"accession": "IGVFDS2308SBSR",
"file_set_type": "principal analysis",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"status": "released",
"summary": "lentiMPRA: reporter experiment, reporter experiment barcode"
},
{
"@id": "/analysis-sets/IGVFDS9175DMRR/",
"accession": "IGVFDS9175DMRR",
"file_set_type": "principal analysis",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"status": "in progress",
"summary": "lentiMPRA: reporter experiment, reporter experiment barcode"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/nadav-ahituv/",
"title": "Nadav Ahituv, UCSF"
},
"multiplexed_in": [],
"notes": "This object's classifications was previously pooled cell specimen. It has been upgraded to both cell line and pooled cell specimen classifications by an upgrade.",
"nucleic_acid_delivery": "lentiviral transduction",
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-01-30T17:46:54.779727+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001184/",
"status": "released",
"term_name": "HEK293T"
}
],
"schema_version": "26",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/nadav-ahituv/",
"status": "current",
"title": "Nadav Ahituv, UCSF"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/696ac72c-9846-469d-8bf1-8bd01856d4ba/",
"title": "Thorben Maass"
},
"summary": "Homo sapiens (female) HEK293T pooled cell specimen transduced (lentivirus) with a reporter library",
"taxa": "Homo sapiens",
"uuid": "8fd8cc7d-71df-4183-b726-9a9e69b704b7",
"virtual": false
}