{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM7878EBBU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7878EBBU",
"age": "unknown",
"aliases": [
"ansuman-satpathy:h1_pancreas_D3"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/67432a8f-ab12-4aa3-a106-d144f41df221/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2024-07-22T00:21:45.483267+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS3349HKDV/",
"accession": "IGVFDS3349HKDV",
"aliases": [
"ansuman-satpathy:multiseq_igvf6_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3390AOKZ/",
"accession": "IGVFDS3390AOKZ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf6_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6426PXJS/",
"accession": "IGVFDS6426PXJS",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf6_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS3232NVVG/",
"accession": "IGVFDS3232NVVG",
"aliases": [
"ansuman-satpathy:igvf6_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS7537OHFN/",
"accession": "IGVFDS7537OHFN",
"aliases": [
"ansuman-satpathy:multiseq_igvf6_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8192PAOP/",
"accession": "IGVFDS8192PAOP",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf6_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4668AHMA/",
"accession": "IGVFDS4668AHMA",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf6_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS7320EONJ/",
"accession": "IGVFDS7320EONJ",
"aliases": [
"ansuman-satpathy:multiseq_igvf6_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4095FWRD/",
"accession": "IGVFDS4095FWRD",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf6_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6310VXMX/",
"accession": "IGVFDS6310VXMX",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf6_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS8391OPLO/",
"accession": "IGVFDS8391OPLO",
"aliases": [
"ansuman-satpathy:multiseq_igvf6_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6424PGVE/",
"accession": "IGVFDS6424PGVE",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf6_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4340TUUZ/",
"accession": "IGVFDS4340TUUZ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf6_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e7a2058d-80fb-46ee-be82-c4d8b26d01ec/",
"certificate_identifier": "IP115-08",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM9282FATG/",
"accession": "IGVFSM9282FATG",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM8276PHGD/",
"accession": "IGVFSM8276PHGD",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM8961ZZQN/",
"accession": "IGVFSM8961ZZQN",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM2522EBPE/",
"accession": "IGVFSM2522EBPE",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM5477NVJT/",
"accession": "IGVFSM5477NVJT",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:12:38.680098+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"schema_version": "25",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/danwei-huangfu/",
"status": "current",
"title": "Danwei Huangfu, MSKCC"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "H1-hESC differentiated cell specimen induced to islet of Langerhans for 3 days, male, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0000006/",
"status": "released",
"term_name": "islet of Langerhans"
},
"taxa": "Homo sapiens",
"time_post_change": 3,
"time_post_change_units": "day",
"uuid": "e030be17-ae56-46ac-bfce-9e92cf5e01c4",
"virtual": false
}