{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM7625PGWV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7625PGWV",
"age": "unknown",
"aliases": [
"buenrostro-bernstein:surya-H443 1_to_16, H456 17_to_32, H462 33_to_48, H511 49_to_56, H371 57_to_72, H514 73_to_88, H492A 89_to_96"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM7625PGWV](/in-vitro-systems/IGVFSM7625PGWV/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7625PGWV/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM7625PGWV](/in-vitro-systems/IGVFSM7625PGWV/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM7625PGWV/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/b1307ee6-f02f-42ef-a523-b0c0903618f0/",
"classifications": [
"organoid"
],
"creation_timestamp": "2025-02-20T20:45:24.570117+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1048RJRX/",
"accession": "IGVFDO1048RJRX",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO3401QPKA/",
"accession": "IGVFDO3401QPKA",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO7463WRZR/",
"accession": "IGVFDO7463WRZR",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO8630TWDU/",
"accession": "IGVFDO8630TWDU",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO5812FFJI/",
"accession": "IGVFDO5812FFJI",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO9637UZMV/",
"accession": "IGVFDO9637UZMV",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS2534CJYA/",
"accession": "IGVFDS2534CJYA",
"aliases": [
"buenrostro-bernstein:surya-human-organoids_mm-set39"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2259DWKL/",
"accession": "IGVFDS2259DWKL",
"aliases": [
"buenrostro-bernstein:surya-human-organoids_mm-set38"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/analysis-sets/IGVFDS0718WXPI/",
"accession": "IGVFDS0718WXPI",
"aliases": [
"buenrostro-bernstein:surya-human-invitro-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"status": "released",
"summary": "SHARE-seq: fragments, sparse gene count matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/49b4e1cd-3aa4-454f-b58f-34a0d79fefee/",
"certificate_identifier": "IP113-28",
"controlled_access": true,
"data_use_limitation": "HMB",
"data_use_limitation_modifiers": [
"MDS"
],
"status": "in progress"
},
{
"@id": "/institutional-certificates/c3a24445-2283-427d-a290-65a31b86ffd0/",
"certificate_identifier": "IP113-29",
"controlled_access": true,
"data_use_limitation": "HMB",
"data_use_limitation_modifiers": [
"MDS"
],
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"multiplexed_in": [],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-03-26T17:33:43.038534+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0011108/",
"status": "released",
"term_name": "colon epithelial cell"
}
],
"schema_version": "26",
"sex": "unspecified",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jason-buenrostro/",
"status": "in progress",
"title": "Jason Buenrostro"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"summary": "Homo sapiens colon epithelial cell organoid induced to colon for 7 days",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0001155/",
"status": "released",
"term_name": "colon"
},
"taxa": "Homo sapiens",
"time_post_change": 7,
"time_post_change_units": "day",
"uuid": "b97ff2bf-237d-487b-8bf8-c6ecb642ef7f",
"virtual": false
}