{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM7589OEYV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7589OEYV",
"age": "unknown",
"aliases": [
"jesse-engreitz:in-vitro-system_NOS3_CRISPRi_FF_R1_FFrep2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Construct library set [IGVFDS8953DFJK](/construct-library-sets/IGVFDS8953DFJK/) has sequence file(s): [IGVFFI9158VFIB](/sequence-files/IGVFFI9158VFIB/), [IGVFFI7019XQBX](/sequence-files/IGVFFI7019XQBX/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/construct-library-sets/IGVFDS8953DFJK/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000753/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing analysis",
"detail": "Construct library set [IGVFDS8953DFJK](/construct-library-sets/IGVFDS8953DFJK/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_input_for",
"path": "/construct-library-sets/IGVFDS8953DFJK/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS8953DFJK/",
"accession": "IGVFDS8953DFJK",
"file_set_type": "guide library",
"status": "released"
}
],
"creation_timestamp": "2024-04-15T19:25:16.280156+00:00",
"demultiplexed_to": [],
"donors": [
"/human-donors/IGVFDO3459DFTW/"
],
"file_sets": [],
"institutional_certificates": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"modifications": [
{
"@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
"cas": "dCas9",
"cas_species": "Streptococcus pyogenes (Sp)",
"fused_domain": "KOX1-KRAB",
"modality": "interference",
"status": "released",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"multiplexed_in": [],
"notes": "This sample's modifications originally included Modification /modifications/2ba01755-df67-453b-b047-f7cdba236665/ which was deleted and replaced with a Crispr Modification igvf:replacement_of_2ba01755-df67-453b-b047-f7cdba236665.",
"origin_of": [],
"part_of": "/in-vitro-systems/IGVFSM1085KVBF/",
"parts": [],
"pooled_in": [],
"release_timestamp": "2024-06-22T00:20:31.348337+00:00",
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"schema_version": "23",
"sex": "female",
"sorted_fractions": [
"/in-vitro-systems/IGVFSM4464SPLF/",
"/in-vitro-systems/IGVFSM4987QNQG/",
"/in-vitro-systems/IGVFSM6512KVQX/",
"/in-vitro-systems/IGVFSM7665HTFX/",
"/in-vitro-systems/IGVFSM4227JQMA/",
"/in-vitro-systems/IGVFSM8817SMTB/",
"/in-vitro-systems/IGVFSM4345IGSA/",
"/in-vitro-systems/IGVFSM3569XFKY/"
],
"sources": [
{
"@id": "/sources/atcc/",
"status": "released",
"title": "ATCC"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
"title": "Chongyon Park"
},
"summary": "TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens",
"uuid": "9f7d5482-96ab-4142-b922-37e327024de5",
"virtual": false
}