{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM7026LUVK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7026LUVK",
"age": "unknown",
"aliases": [
"ansuman-satpathy:mcf7_2"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"cell line"
],
"creation_timestamp": "2025-01-27T22:12:02.510614+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO7503RZHO/",
"accession": "IGVFDO7503RZHO",
"ethnicities": [
"European"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/curated-sets/IGVFDS8716EOGA/",
"accession": "IGVFDS8716EOGA",
"aliases": [
"ansuman-satpathy:curated_set_barcode_map_igvf18"
],
"file_set_type": "barcodes",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "in progress",
"summary": "barcodes"
},
{
"@id": "/auxiliary-sets/IGVFDS7168GITK/",
"accession": "IGVFDS7168GITK",
"aliases": [
"ansuman-satpathy:multiseq_igvf18_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1210CYWP/",
"accession": "IGVFDS1210CYWP",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf18_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1427CODJ/",
"accession": "IGVFDS1427CODJ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf18_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS4963SRAJ/",
"accession": "IGVFDS4963SRAJ",
"aliases": [
"ansuman-satpathy:igvf18_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS7744TQIF/",
"accession": "IGVFDS7744TQIF",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf18_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS5027XUOE/",
"accession": "IGVFDS5027XUOE",
"aliases": [
"ansuman-satpathy:multiseq_igvf18_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9859SAHD/",
"accession": "IGVFDS9859SAHD",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf18_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS0786WISU/",
"accession": "IGVFDS0786WISU",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf18_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9563IPMU/",
"accession": "IGVFDS9563IPMU",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf18_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS2437JWUW/",
"accession": "IGVFDS2437JWUW",
"aliases": [
"ansuman-satpathy:multiseq_igvf18_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4170WANT/",
"accession": "IGVFDS4170WANT",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf18_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS6039YTCL/",
"accession": "IGVFDS6039YTCL",
"aliases": [
"ansuman-satpathy:multiseq_igvf18_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9305YTYU/",
"accession": "IGVFDS9305YTYU",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf18_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/4ff60cda-a674-443c-8864-009fa16b9f43/",
"certificate_identifier": "IP115-25",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM4392KEFB/",
"accession": "IGVFSM4392KEFB",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM9642EHZY/",
"accession": "IGVFSM9642EHZY",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM5815WALV/",
"accession": "IGVFSM5815WALV",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM3125MLLP/",
"accession": "IGVFSM3125MLLP",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:17:57.583604+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
}
],
"schema_version": "25",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jesse-engreitz/",
"status": "current",
"title": "Jesse Engreitz, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "MCF-7 cell line, female, Homo sapiens",
"taxa": "Homo sapiens",
"uuid": "b8da82ca-579f-4ec4-bd53-872d29f90dac",
"virtual": false
}