{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM6703IVGD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6703IVGD",
"age": "44",
"age_units": "year",
"aliases": [
"chongyuan-luo:C38_day14"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6703IVGD](/in-vitro-systems/IGVFSM6703IVGD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6703IVGD/"
}
]
},
"award": {
"@id": "/awards/HG012079/",
"component": "networks"
},
"cell_fate_change_protocol": "/documents/3dff6bfa-965f-4135-9cee-44737a973c5e/",
"classifications": [
"reprogrammed cell specimen"
],
"creation_timestamp": "2024-11-15T19:27:25.693464+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO2328XGNY/",
"accession": "IGVFDO2328XGNY",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4538IFHF/",
"accession": "IGVFDS4538IFHF",
"aliases": [
"chongyuan-luo:pgp_snm3c_C38_day14"
],
"file_set_type": "experimental data",
"lab": {
"title": "Chongyuan Luo, UCLA"
},
"preferred_assay_title": "snM3C-seq",
"status": "released",
"summary": "snM3C-seq"
},
{
"@id": "/measurement-sets/IGVFDS8285DFYN/",
"accession": "IGVFDS8285DFYN",
"aliases": [
"chongyuan-luo:ys3f_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Kathrin Plath, UCLA"
},
"preferred_assay_title": "10x multiome",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3717ZQOY/",
"accession": "IGVFDS3717ZQOY",
"aliases": [
"chongyuan-luo:ys3f_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Kathrin Plath, UCLA"
},
"preferred_assay_title": "10x multiome",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/18b2e0b6-edec-475b-af8a-0afc04fa43d7/",
"certificate_identifier": "IP107-02",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/chongyuan-luo/",
"title": "Chongyuan Luo, UCLA"
},
"lower_bound_age": 44,
"lower_bound_age_in_hours": 385440,
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM3865SYBX/",
"accession": "IGVFSM3865SYBX",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/primary-cells/IGVFSM4462WZBJ/",
"accession": "IGVFSM4462WZBJ",
"status": "released"
},
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-02-11T00:54:49.001967+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "released",
"term_name": "fibroblast"
}
],
"schema_version": "26",
"sex": "unspecified",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/coriell/",
"status": "released",
"title": "Coriell"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
"title": "Terence Li"
},
"submitter_comment": "This sample was originally originated_from /in-vitro-systems/IGVFSM6248OWYO/ which was replaced by a primary cell.",
"summary": "Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days",
"targeted_sample_term": {
"@id": "/sample-terms/EFO_0004905/",
"status": "released",
"term_name": "induced pluripotent stem cell"
},
"taxa": "Homo sapiens",
"time_post_change": 14,
"time_post_change_units": "day",
"upper_bound_age": 44,
"upper_bound_age_in_hours": 385440,
"uuid": "70238a7f-703a-4260-87bf-029d6b97cc34",
"virtual": false
}