{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM6509ESZQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6509ESZQ",
"age": "unknown",
"aliases": [
"ansuman-satpathy:telohaec_4hr_1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM6509ESZQ](/in-vitro-systems/IGVFSM6509ESZQ/) has in progress subobject treatment [d2d49540-dd91-49e2-b877-ce9aa0af8bb0](/treatments/d2d49540-dd91-49e2-b877-ce9aa0af8bb0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM6509ESZQ/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000753/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"cell line"
],
"creation_timestamp": "2024-07-19T22:07:28.898689+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO3459DFTW/",
"accession": "IGVFDO3459DFTW",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS5111SPGA/",
"accession": "IGVFDS5111SPGA",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf2_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6369SLCB/",
"accession": "IGVFDS6369SLCB",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf2_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS9860EXKL/",
"accession": "IGVFDS9860EXKL",
"aliases": [
"ansuman-satpathy:multiseq_igvf2_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS1583PWNS/",
"accession": "IGVFDS1583PWNS",
"aliases": [
"ansuman-satpathy:igvf2_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/20743336-7ae0-4e51-ab85-4ef4401b9b7d/",
"certificate_identifier": "IP115-16",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM3646QLDO/",
"accession": "IGVFSM3646QLDO",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:10:41.280903+00:00",
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"schema_version": "26",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/guillaume-lettre/",
"status": "current",
"title": "Guillaume Lettre, MHI"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/d2d49540-dd91-49e2-b877-ce9aa0af8bb0/",
"depletion": false,
"purpose": "perturbation",
"status": "in progress",
"treatment_term_name": "tumor necrosis factor alpha",
"treatment_type": "protein"
}
],
"uuid": "fe70e3e5-9668-4f7f-970b-4bfa0881534e",
"virtual": false
}