B cell — IGVFSM6397OVNK

preview
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM6397OVNK/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM6397OVNK",
11    "age": "33",
12    "age_units": "year",
13    "aliases": [
14        "harinder-singh:D4_control_perturbation_scRNAseq_r2"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012041/",
19        "component": "networks"
20    },
21    "cell_fate_change_protocol": "/documents/94d33267-3f2b-4493-84b3-6892427d2611/",
22    "classifications": [
23        "differentiated cell specimen"
24    ],
25    "creation_timestamp": "2025-01-14T03:46:54.824192+00:00",
26    "date_obtained": "2024-02-12",
27    "demultiplexed_to": [],
28    "donors": [
29        {
30            "@id": "/human-donors/IGVFDO9916UELD/",
31            "accession": "IGVFDO9916UELD",
32            "ethnicities": [
33                "African American"
34            ],
35            "status": "preview"
36        }
37    ],
38    "file_sets": [
39        {
40            "@id": "/measurement-sets/IGVFDS5867EPVA/",
41            "accession": "IGVFDS5867EPVA",
42            "aliases": [
43                "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_measurement"
44            ],
45            "file_set_type": "experimental data",
46            "lab": {
47                "title": "Harinder Singh, University of Pittsburgh"
48            },
49            "preferred_assay_title": "scRNA-seq",
50            "status": "preview",
51            "summary": "scRNA-seq"
52        },
53        {
54            "@id": "/analysis-sets/IGVFDS4623YEKE/",
55            "accession": "IGVFDS4623YEKE",
56            "aliases": [
57                "harinder-singh:AnalysisSet_measurement-IGVFDS5867EPVA_sc-uniform-pipeline"
58            ],
59            "file_set_type": "intermediate analysis",
60            "lab": {
61                "title": "Harinder Singh, University of Pittsburgh"
62            },
63            "status": "in progress",
64            "summary": "scRNA-seq"
65        },
66        {
67            "@id": "/analysis-sets/IGVFDS6790TZFT/",
68            "accession": "IGVFDS6790TZFT",
69            "aliases": [
70                "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_cellranger_analysis_set"
71            ],
72            "file_set_type": "intermediate analysis",
73            "lab": {
74                "title": "Harinder Singh, University of Pittsburgh"
75            },
76            "status": "preview",
77            "summary": "scRNA-seq: sparse gene count matrix"
78        },
79        {
80            "@id": "/analysis-sets/IGVFDS7845HWEA/",
81            "accession": "IGVFDS7845HWEA",
82            "aliases": [
83                "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_mira_analysis_set"
84            ],
85            "file_set_type": "principal analysis",
86            "lab": {
87                "title": "Harinder Singh, University of Pittsburgh"
88            },
89            "status": "preview",
90            "summary": "scRNA-seq: sparse gene count matrix"
91        }
92    ],
93    "institutional_certificates": [
94        {
95            "@id": "/institutional-certificates/4786e123-f40d-4b08-aa06-b5f35e9cc453/",
96            "certificate_identifier": "IP108-01",
97            "controlled_access": true,
98            "data_use_limitation": "HMB",
99            "data_use_limitation_summary": "HMB",
100            "status": "in progress"
101        }
102    ],
103    "lab": {
104        "@id": "/labs/harinder-singh/",
105        "title": "Harinder Singh, University of Pittsburgh"
106    },
107    "lower_bound_age": 33,
108    "lower_bound_age_in_hours": 289080,
109    "multiplexed_in": [
110        {
111            "@id": "/multiplexed-samples/IGVFSM5472KWSO/",
112            "accession": "IGVFSM5472KWSO",
113            "status": "preview"
114        }
115    ],
116    "origin_of": [],
117    "originated_from": {
118        "@id": "/primary-cells/IGVFSM8979DXJU/",
119        "accession": "IGVFSM8979DXJU",
120        "status": "preview"
121    },
122    "parts": [],
123    "pooled_in": [],
124    "sample_terms": [
125        {
126            "@id": "/sample-terms/CL_0000236/",
127            "status": "released",
128            "term_name": "B cell"
129        }
130    ],
131    "schema_version": "27",
132    "sex": "male",
133    "sorted_fractions": [],
134    "sources": [
135        {
136            "@id": "/sources/stem-cell-technologies/",
137            "status": "released",
138            "title": "STEMCELL Technologies"
139        }
140    ],
141    "status": "preview",
142    "submitted_by": {
143        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
144        "title": "Nicholas Pease"
145    },
146    "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days",
147    "targeted_sample_term": {
148        "@id": "/sample-terms/CL_0000980/",
149        "status": "released",
150        "term_name": "plasmablast"
151    },
152    "taxa": "Homo sapiens",
153    "time_post_change": 4,
154    "time_post_change_units": "day",
155    "upper_bound_age": 33,
156    "upper_bound_age_in_hours": 289080,
157    "uuid": "adc3a146-986f-45fe-82c4-dbd5d8c0db29",
158    "virtual": false
159}