{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM5879GUML/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5879GUML",
"age": "unknown",
"aliases": [
"ansuman-satpathy:bcell_donor1_d2"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/94d33267-3f2b-4493-84b3-6892427d2611/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2024-07-23T20:58:17.631351+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"ethnicities": [
"African American"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4370KUWU/",
"accession": "IGVFDS4370KUWU",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf9_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS3446FAJU/",
"accession": "IGVFDS3446FAJU",
"aliases": [
"ansuman-satpathy:multiseq_igvf9_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2108XESQ/",
"accession": "IGVFDS2108XESQ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf9_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS6435ALNY/",
"accession": "IGVFDS6435ALNY",
"aliases": [
"ansuman-satpathy:igvf9_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS9385ZIKY/",
"accession": "IGVFDS9385ZIKY",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf9_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1742BLLN/",
"accession": "IGVFDS1742BLLN",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf9_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS4415ANKP/",
"accession": "IGVFDS4415ANKP",
"aliases": [
"ansuman-satpathy:multiseq_igvf9_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS2269RNLP/",
"accession": "IGVFDS2269RNLP",
"aliases": [
"ansuman-satpathy:igvf9_analysis_set_10x3"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS2733VDKJ/",
"accession": "IGVFDS2733VDKJ",
"aliases": [
"ansuman-satpathy:multiseq_igvf9_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3634TPOY/",
"accession": "IGVFDS3634TPOY",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf9_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5941UNYO/",
"accession": "IGVFDS5941UNYO",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf9_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS7527QIIX/",
"accession": "IGVFDS7527QIIX",
"aliases": [
"ansuman-satpathy:igvf9_analysis_set",
"ansuman-satpathy:igvf9_analysis_set_10x1"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/460c2060-3b32-43c1-ab4b-b2ef0fbeb2b2/",
"certificate_identifier": "IP115-22",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM2512OHNK/",
"accession": "IGVFSM2512OHNK",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM2794HHHZ/",
"accession": "IGVFSM2794HHHZ",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM9678IFHW/",
"accession": "IGVFSM9678IFHW",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/primary-cells/IGVFSM5523SUWV/",
"accession": "IGVFSM5523SUWV",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-22T00:38:10.652849+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"schema_version": "26",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/harinder-singh/",
"status": "current",
"title": "Harinder Singh, University of Pittsburgh"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000980/",
"status": "released",
"term_name": "plasmablast"
},
"taxa": "Homo sapiens",
"time_post_change": 2,
"time_post_change_units": "day",
"uuid": "383d6614-e637-4138-9e24-de580b8b4157",
"virtual": false
}