GM25256 (WTC-11) — IGVFSM5481HUWA

{
    "@context": "/terms/",
    "@id": "/in-vitro-systems/IGVFSM5481HUWA/",
    "@type": [
        "InVitroSystem",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "IGVFSM5481HUWA",
    "age": "unknown",
    "aliases": [
        "nikhil-munshi:differentited_WTC11_TF_Perturb_Seq_Pilot_iPSC_Lenti"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Preview construct library set [IGVFDS2302LCEO](/construct-library-sets/IGVFDS2302LCEO/) has in progress subobject tabular file [IGVFFI7568FEHI](/tabular-files/IGVFFI7568FEHI/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/construct-library-sets/IGVFDS2302LCEO/"
            }
        ],
        "NOT_COMPLIANT": [
            {
                "category": "missing plasmid map",
                "detail": "Construct library set [IGVFDS2302LCEO](/construct-library-sets/IGVFDS2302LCEO/) does not have a plasmid map attached in `documents`. Construct library sets are expected to be associated with a plasmid map document.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_construct_library_set_plasmid_map",
                "path": "/construct-library-sets/IGVFDS2302LCEO/"
            }
        ],
        "WARNING": [
            {
                "category": "missing files",
                "detail": "Construct library set [IGVFDS2302LCEO](/construct-library-sets/IGVFDS2302LCEO/) has no `files`. File sets are expected to have files.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_no_files",
                "path": "/construct-library-sets/IGVFDS2302LCEO/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011996/",
        "component": "functional characterization"
    },
    "classifications": [
        "cell line"
    ],
    "construct_library_sets": [
        {
            "@id": "/construct-library-sets/IGVFDS2302LCEO/",
            "accession": "IGVFDS2302LCEO",
            "file_set_type": "guide library",
            "status": "preview"
        }
    ],
    "creation_timestamp": "2024-02-21T20:51:56.865684+00:00",
    "demultiplexed_to": [],
    "description": "infected WTC11 -dCAS9-KRAB-Lenti-sgRNA sequenced at the iPSC state",
    "donors": [
        "/human-donors/IGVFDO1756PPKO/"
    ],
    "file_sets": [],
    "institutional_certificates": [],
    "lab": {
        "@id": "/labs/gary-hon/",
        "title": "Gary Hon, UT"
    },
    "modifications": [
        {
            "@id": "/crispr-modifications/0a63b754-eca4-44aa-bbc2-fccdc6c44fb5/",
            "cas": "dCas9",
            "cas_species": "Streptococcus pyogenes (Sp)",
            "modality": "interference",
            "status": "preview",
            "summary": "CRISPRi Sp-dCas9"
        }
    ],
    "multiplexed_in": [],
    "nucleic_acid_delivery": "lentiviral transduction",
    "origin_of": [],
    "parts": [
        "/in-vitro-systems/IGVFSM2726ORRN/",
        "/in-vitro-systems/IGVFSM1153INDY/",
        "/in-vitro-systems/IGVFSM9411HZLU/",
        "/in-vitro-systems/IGVFSM1597KVRS/"
    ],
    "pooled_in": [],
    "sample_terms": [
        {
            "@id": "/sample-terms/EFO_0009747/",
            "status": "released",
            "term_name": "GM25256 (WTC-11)"
        }
    ],
    "schema_version": "23",
    "sex": "male",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/nikhil-munshi/",
            "status": "current",
            "title": "Nikhil Munshi, UT"
        }
    ],
    "status": "preview",
    "submitted_by": {
        "@id": "/users/b05645f1-2d56-4a5e-b272-4601e555a3fa/",
        "title": "Mpathi Nzima"
    },
    "summary": "GM25256 (WTC-11) cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library",
    "taxa": "Homo sapiens",
    "uuid": "8bf396d3-8c51-4a6c-af0b-91c3795f4b68",
    "virtual": false
}