K562 — IGVFSM5033TZAM

released
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM5033TZAM/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM5033TZAM",
11    "age": "unknown",
12    "aliases": [
13        "tim-reddy:starr-seq-k562-P018"
14    ],
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "missing publication",
19                "detail": "Construct library set [IGVFDS5274ZJXU](/construct-library-sets/IGVFDS5274ZJXU/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_file_set_missing_publication",
23                "path": "/construct-library-sets/IGVFDS5274ZJXU/"
24            },
25            {
26                "category": "missing sequence specification",
27                "detail": "Construct library set [IGVFDS5274ZJXU](/construct-library-sets/IGVFDS5274ZJXU/) has sequence file(s): [IGVFFI6659KRSH](/sequence-files/IGVFFI6659KRSH/), [IGVFFI2154PJUR](/sequence-files/IGVFFI2154PJUR/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
28                "level": 30,
29                "level_name": "INTERNAL_ACTION",
30                "name": "audit_missing_seqspec",
31                "path": "/construct-library-sets/IGVFDS5274ZJXU/"
32            },
33            {
34                "category": "missing publication",
35                "detail": "In vitro system [IGVFSM5033TZAM](/in-vitro-systems/IGVFSM5033TZAM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
36                "level": 30,
37                "level_name": "INTERNAL_ACTION",
38                "name": "audit_sample_missing_publication",
39                "path": "/in-vitro-systems/IGVFSM5033TZAM/"
40            }
41        ]
42    },
43    "award": {
44        "@id": "/awards/HG012053/",
45        "component": "functional characterization"
46    },
47    "classifications": [
48        "cell line"
49    ],
50    "construct_library_sets": [
51        {
52            "@id": "/construct-library-sets/IGVFDS5274ZJXU/",
53            "accession": "IGVFDS5274ZJXU",
54            "file_set_type": "reporter library",
55            "status": "released"
56        }
57    ],
58    "creation_timestamp": "2025-02-06T03:53:54.134111+00:00",
59    "demultiplexed_to": [],
60    "donors": [
61        {
62            "@id": "/human-donors/IGVFDO9208RPQQ/",
63            "accession": "IGVFDO9208RPQQ",
64            "status": "released"
65        }
66    ],
67    "file_sets": [
68        {
69            "@id": "/measurement-sets/IGVFDS0738WLJF/",
70            "accession": "IGVFDS0738WLJF",
71            "aliases": [
72                "tim-reddy:starr-seq-measurement-set-k562-P018"
73            ],
74            "file_set_type": "experimental data",
75            "lab": {
76                "title": "Tim Reddy, Duke"
77            },
78            "preferred_assay_title": "SUPERSTARR",
79            "status": "released",
80            "summary": "SUPERSTARR integrating a reporter library targeting random selections genome-wide"
81        },
82        {
83            "@id": "/analysis-sets/IGVFDS8554TSTG/",
84            "accession": "IGVFDS8554TSTG",
85            "aliases": [
86                "tim-reddy:starr-seq-principal-analysis-set-k562-P018"
87            ],
88            "file_set_type": "principal analysis",
89            "lab": {
90                "title": "Tim Reddy, Duke"
91            },
92            "status": "released",
93            "summary": "SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants"
94        }
95    ],
96    "institutional_certificates": [],
97    "lab": {
98        "@id": "/labs/tim-reddy/",
99        "title": "Tim Reddy, Duke"
100    },
101    "multiplexed_in": [],
102    "nucleic_acid_delivery": "nucleofection",
103    "origin_of": [],
104    "parts": [],
105    "pooled_in": [],
106    "release_timestamp": "2025-04-09T16:39:59.216065+00:00",
107    "sample_terms": [
108        {
109            "@id": "/sample-terms/EFO_0002067/",
110            "status": "released",
111            "term_name": "K562"
112        }
113    ],
114    "schema_version": "26",
115    "sex": "female",
116    "sorted_fractions": [],
117    "sources": [
118        {
119            "@id": "/labs/tim-reddy/",
120            "status": "current",
121            "title": "Tim Reddy, Duke"
122        }
123    ],
124    "status": "released",
125    "submitted_by": {
126        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
127        "title": "Alejandro Barrera"
128    },
129    "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library",
130    "taxa": "Homo sapiens",
131    "uuid": "6388daf8-e289-4341-b7a7-b68089981059",
132    "virtual": false
133}