B cell — IGVFSM4605UDLV

1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM4605UDLV/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM4605UDLV",
11    "age": "unknown",
12    "aliases": [
13        "ansuman-satpathy:bcell_donor1_d6_rep2"
14    ],
15    "audit": {},
16    "award": {
17        "@id": "/awards/HG012076/",
18        "component": "mapping"
19    },
20    "cell_fate_change_protocol": "/documents/94d33267-3f2b-4493-84b3-6892427d2611/",
21    "classifications": [
22        "differentiated cell specimen"
23    ],
24    "creation_timestamp": "2024-07-23T20:58:22.554396+00:00",
25    "demultiplexed_to": [],
26    "donors": [
27        {
28            "@id": "/human-donors/IGVFDO1718HCES/",
29            "accession": "IGVFDO1718HCES",
30            "ethnicities": [
31                "African American"
32            ],
33            "status": "released"
34        }
35    ],
36    "file_sets": [
37        {
38            "@id": "/measurement-sets/IGVFDS5862OZVJ/",
39            "accession": "IGVFDS5862OZVJ",
40            "aliases": [
41                "ansuman-satpathy:snRNA-seq_igvf12_10x3"
42            ],
43            "file_set_type": "experimental data",
44            "lab": {
45                "title": "Ansuman Satpathy, Stanford"
46            },
47            "preferred_assay_title": "10x multiome with MULTI-seq",
48            "status": "released",
49            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
50        },
51        {
52            "@id": "/measurement-sets/IGVFDS8054AFXK/",
53            "accession": "IGVFDS8054AFXK",
54            "aliases": [
55                "ansuman-satpathy:snATAC-seq_igvf12_10x3"
56            ],
57            "file_set_type": "experimental data",
58            "lab": {
59                "title": "Ansuman Satpathy, Stanford"
60            },
61            "preferred_assay_title": "10x multiome with MULTI-seq",
62            "status": "released",
63            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
64        },
65        {
66            "@id": "/auxiliary-sets/IGVFDS8701GVWQ/",
67            "accession": "IGVFDS8701GVWQ",
68            "aliases": [
69                "ansuman-satpathy:multiseq_igvf12_10x3"
70            ],
71            "file_set_type": "lipid-conjugated oligo sequencing",
72            "lab": {
73                "title": "Ansuman Satpathy, Stanford"
74            },
75            "status": "released",
76            "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
77        },
78        {
79            "@id": "/analysis-sets/IGVFDS3005LSBM/",
80            "accession": "IGVFDS3005LSBM",
81            "aliases": [
82                "ansuman-satpathy:igvf12_analysis_set_10x3"
83            ],
84            "file_set_type": "intermediate analysis",
85            "lab": {
86                "title": "Ansuman Satpathy, Stanford"
87            },
88            "status": "released",
89            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
90        },
91        {
92            "@id": "/measurement-sets/IGVFDS2361VFLK/",
93            "accession": "IGVFDS2361VFLK",
94            "aliases": [
95                "ansuman-satpathy:snRNA-seq_igvf12_10x4"
96            ],
97            "file_set_type": "experimental data",
98            "lab": {
99                "title": "Ansuman Satpathy, Stanford"
100            },
101            "preferred_assay_title": "10x multiome with MULTI-seq",
102            "status": "released",
103            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
104        },
105        {
106            "@id": "/auxiliary-sets/IGVFDS5974ACGH/",
107            "accession": "IGVFDS5974ACGH",
108            "aliases": [
109                "ansuman-satpathy:multiseq_igvf12_10x4"
110            ],
111            "file_set_type": "lipid-conjugated oligo sequencing",
112            "lab": {
113                "title": "Ansuman Satpathy, Stanford"
114            },
115            "status": "released",
116            "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
117        },
118        {
119            "@id": "/measurement-sets/IGVFDS5103JQSX/",
120            "accession": "IGVFDS5103JQSX",
121            "aliases": [
122                "ansuman-satpathy:snATAC-seq_igvf12_10x4"
123            ],
124            "file_set_type": "experimental data",
125            "lab": {
126                "title": "Ansuman Satpathy, Stanford"
127            },
128            "preferred_assay_title": "10x multiome with MULTI-seq",
129            "status": "released",
130            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
131        },
132        {
133            "@id": "/analysis-sets/IGVFDS4731QGJR/",
134            "accession": "IGVFDS4731QGJR",
135            "aliases": [
136                "ansuman-satpathy:igvf12_analysis_set_10x4"
137            ],
138            "file_set_type": "intermediate analysis",
139            "lab": {
140                "title": "Ansuman Satpathy, Stanford"
141            },
142            "status": "released",
143            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
144        },
145        {
146            "@id": "/measurement-sets/IGVFDS8924NQYH/",
147            "accession": "IGVFDS8924NQYH",
148            "aliases": [
149                "ansuman-satpathy:snRNA-seq_igvf12_10x7"
150            ],
151            "file_set_type": "experimental data",
152            "lab": {
153                "title": "Ansuman Satpathy, Stanford"
154            },
155            "preferred_assay_title": "10x multiome with MULTI-seq",
156            "status": "released",
157            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
158        },
159        {
160            "@id": "/auxiliary-sets/IGVFDS0327AJZO/",
161            "accession": "IGVFDS0327AJZO",
162            "aliases": [
163                "ansuman-satpathy:multiseq_igvf12_10x7"
164            ],
165            "file_set_type": "lipid-conjugated oligo sequencing",
166            "lab": {
167                "title": "Ansuman Satpathy, Stanford"
168            },
169            "status": "released",
170            "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
171        },
172        {
173            "@id": "/measurement-sets/IGVFDS9237NVSE/",
174            "accession": "IGVFDS9237NVSE",
175            "aliases": [
176                "ansuman-satpathy:snATAC-seq_igvf12_10x7"
177            ],
178            "file_set_type": "experimental data",
179            "lab": {
180                "title": "Ansuman Satpathy, Stanford"
181            },
182            "preferred_assay_title": "10x multiome with MULTI-seq",
183            "status": "released",
184            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
185        },
186        {
187            "@id": "/analysis-sets/IGVFDS5437FJHN/",
188            "accession": "IGVFDS5437FJHN",
189            "aliases": [
190                "ansuman-satpathy:igvf12_analysis_set_10x7"
191            ],
192            "file_set_type": "intermediate analysis",
193            "lab": {
194                "title": "Ansuman Satpathy, Stanford"
195            },
196            "status": "released",
197            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
198        },
199        {
200            "@id": "/measurement-sets/IGVFDS8103FALC/",
201            "accession": "IGVFDS8103FALC",
202            "aliases": [
203                "ansuman-satpathy:snATAC-seq_igvf12_10x1"
204            ],
205            "file_set_type": "experimental data",
206            "lab": {
207                "title": "Ansuman Satpathy, Stanford"
208            },
209            "preferred_assay_title": "10x multiome with MULTI-seq",
210            "status": "released",
211            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
212        },
213        {
214            "@id": "/auxiliary-sets/IGVFDS7563XAXA/",
215            "accession": "IGVFDS7563XAXA",
216            "aliases": [
217                "ansuman-satpathy:multiseq_igvf12_10x1"
218            ],
219            "file_set_type": "lipid-conjugated oligo sequencing",
220            "lab": {
221                "title": "Ansuman Satpathy, Stanford"
222            },
223            "status": "released",
224            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
225        },
226        {
227            "@id": "/measurement-sets/IGVFDS1570UJMU/",
228            "accession": "IGVFDS1570UJMU",
229            "aliases": [
230                "ansuman-satpathy:snRNA-seq_igvf12_10x1"
231            ],
232            "file_set_type": "experimental data",
233            "lab": {
234                "title": "Ansuman Satpathy, Stanford"
235            },
236            "preferred_assay_title": "10x multiome with MULTI-seq",
237            "status": "released",
238            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
239        },
240        {
241            "@id": "/analysis-sets/IGVFDS0793KZKS/",
242            "accession": "IGVFDS0793KZKS",
243            "aliases": [
244                "ansuman-satpathy:igvf12_analysis_set",
245                "ansuman-satpathy:igvf12_analysis_set_10x1"
246            ],
247            "file_set_type": "intermediate analysis",
248            "lab": {
249                "title": "Ansuman Satpathy, Stanford"
250            },
251            "status": "released",
252            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
253        },
254        {
255            "@id": "/auxiliary-sets/IGVFDS2328ODXN/",
256            "accession": "IGVFDS2328ODXN",
257            "aliases": [
258                "ansuman-satpathy:multiseq_igvf12_10x2"
259            ],
260            "file_set_type": "lipid-conjugated oligo sequencing",
261            "lab": {
262                "title": "Ansuman Satpathy, Stanford"
263            },
264            "status": "released",
265            "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
266        },
267        {
268            "@id": "/measurement-sets/IGVFDS1219HABJ/",
269            "accession": "IGVFDS1219HABJ",
270            "aliases": [
271                "ansuman-satpathy:snRNA-seq_igvf12_10x2"
272            ],
273            "file_set_type": "experimental data",
274            "lab": {
275                "title": "Ansuman Satpathy, Stanford"
276            },
277            "preferred_assay_title": "10x multiome with MULTI-seq",
278            "status": "released",
279            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
280        },
281        {
282            "@id": "/measurement-sets/IGVFDS7359TFTN/",
283            "accession": "IGVFDS7359TFTN",
284            "aliases": [
285                "ansuman-satpathy:snATAC-seq_igvf12_10x2"
286            ],
287            "file_set_type": "experimental data",
288            "lab": {
289                "title": "Ansuman Satpathy, Stanford"
290            },
291            "preferred_assay_title": "10x multiome with MULTI-seq",
292            "status": "released",
293            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
294        },
295        {
296            "@id": "/analysis-sets/IGVFDS4931IGGD/",
297            "accession": "IGVFDS4931IGGD",
298            "aliases": [
299                "ansuman-satpathy:igvf12_analysis_set_10x2"
300            ],
301            "file_set_type": "intermediate analysis",
302            "lab": {
303                "title": "Ansuman Satpathy, Stanford"
304            },
305            "status": "released",
306            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
307        },
308        {
309            "@id": "/measurement-sets/IGVFDS0584KNPT/",
310            "accession": "IGVFDS0584KNPT",
311            "aliases": [
312                "ansuman-satpathy:snATAC-seq_igvf12_10x5"
313            ],
314            "file_set_type": "experimental data",
315            "lab": {
316                "title": "Ansuman Satpathy, Stanford"
317            },
318            "preferred_assay_title": "10x multiome with MULTI-seq",
319            "status": "released",
320            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
321        },
322        {
323            "@id": "/auxiliary-sets/IGVFDS8937ZULR/",
324            "accession": "IGVFDS8937ZULR",
325            "aliases": [
326                "ansuman-satpathy:multiseq_igvf12_10x5"
327            ],
328            "file_set_type": "lipid-conjugated oligo sequencing",
329            "lab": {
330                "title": "Ansuman Satpathy, Stanford"
331            },
332            "status": "released",
333            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
334        },
335        {
336            "@id": "/measurement-sets/IGVFDS7297BZEA/",
337            "accession": "IGVFDS7297BZEA",
338            "aliases": [
339                "ansuman-satpathy:snRNA-seq_igvf12_10x5"
340            ],
341            "file_set_type": "experimental data",
342            "lab": {
343                "title": "Ansuman Satpathy, Stanford"
344            },
345            "preferred_assay_title": "10x multiome with MULTI-seq",
346            "status": "released",
347            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
348        },
349        {
350            "@id": "/analysis-sets/IGVFDS7016ZFVC/",
351            "accession": "IGVFDS7016ZFVC",
352            "aliases": [
353                "ansuman-satpathy:igvf12_analysis_set_10x5"
354            ],
355            "file_set_type": "intermediate analysis",
356            "lab": {
357                "title": "Ansuman Satpathy, Stanford"
358            },
359            "status": "released",
360            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
361        },
362        {
363            "@id": "/auxiliary-sets/IGVFDS5700OHED/",
364            "accession": "IGVFDS5700OHED",
365            "aliases": [
366                "ansuman-satpathy:multiseq_igvf12_10x6"
367            ],
368            "file_set_type": "lipid-conjugated oligo sequencing",
369            "lab": {
370                "title": "Ansuman Satpathy, Stanford"
371            },
372            "status": "released",
373            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
374        },
375        {
376            "@id": "/measurement-sets/IGVFDS7161RJGI/",
377            "accession": "IGVFDS7161RJGI",
378            "aliases": [
379                "ansuman-satpathy:snATAC-seq_igvf12_10x6"
380            ],
381            "file_set_type": "experimental data",
382            "lab": {
383                "title": "Ansuman Satpathy, Stanford"
384            },
385            "preferred_assay_title": "10x multiome with MULTI-seq",
386            "status": "released",
387            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
388        },
389        {
390            "@id": "/measurement-sets/IGVFDS1581RZTR/",
391            "accession": "IGVFDS1581RZTR",
392            "aliases": [
393                "ansuman-satpathy:snRNA-seq_igvf12_10x6"
394            ],
395            "file_set_type": "experimental data",
396            "lab": {
397                "title": "Ansuman Satpathy, Stanford"
398            },
399            "preferred_assay_title": "10x multiome with MULTI-seq",
400            "status": "released",
401            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
402        },
403        {
404            "@id": "/analysis-sets/IGVFDS6443DIXD/",
405            "accession": "IGVFDS6443DIXD",
406            "aliases": [
407                "ansuman-satpathy:igvf12_analysis_set_10x6"
408            ],
409            "file_set_type": "intermediate analysis",
410            "lab": {
411                "title": "Ansuman Satpathy, Stanford"
412            },
413            "status": "released",
414            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
415        }
416    ],
417    "institutional_certificates": [
418        {
419            "@id": "/institutional-certificates/460c2060-3b32-43c1-ab4b-b2ef0fbeb2b2/",
420            "certificate_identifier": "IP115-22",
421            "controlled_access": true,
422            "data_use_limitation": "GRU",
423            "status": "released"
424        }
425    ],
426    "lab": {
427        "@id": "/labs/ansuman-satpathy/",
428        "title": "Ansuman Satpathy, Stanford"
429    },
430    "multiplexed_in": [
431        {
432            "@id": "/multiplexed-samples/IGVFSM7114MTSH/",
433            "accession": "IGVFSM7114MTSH",
434            "status": "released"
435        },
436        {
437            "@id": "/multiplexed-samples/IGVFSM3762JDVU/",
438            "accession": "IGVFSM3762JDVU",
439            "status": "released"
440        },
441        {
442            "@id": "/multiplexed-samples/IGVFSM6125HAMH/",
443            "accession": "IGVFSM6125HAMH",
444            "status": "released"
445        },
446        {
447            "@id": "/multiplexed-samples/IGVFSM3641EGVH/",
448            "accession": "IGVFSM3641EGVH",
449            "status": "released"
450        },
451        {
452            "@id": "/multiplexed-samples/IGVFSM5189FTFS/",
453            "accession": "IGVFSM5189FTFS",
454            "status": "released"
455        },
456        {
457            "@id": "/multiplexed-samples/IGVFSM1640UGWP/",
458            "accession": "IGVFSM1640UGWP",
459            "status": "released"
460        },
461        {
462            "@id": "/multiplexed-samples/IGVFSM5574TAPU/",
463            "accession": "IGVFSM5574TAPU",
464            "status": "released"
465        }
466    ],
467    "origin_of": [],
468    "originated_from": {
469        "@id": "/primary-cells/IGVFSM1561IRMB/",
470        "accession": "IGVFSM1561IRMB",
471        "status": "released"
472    },
473    "parts": [],
474    "pooled_in": [],
475    "protocols": [
476        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
477    ],
478    "release_timestamp": "2025-03-22T00:38:29.315099+00:00",
479    "sample_terms": [
480        {
481            "@id": "/sample-terms/CL_0000236/",
482            "status": "released",
483            "term_name": "B cell"
484        }
485    ],
486    "schema_version": "26",
487    "sex": "male",
488    "sorted_fractions": [],
489    "sources": [
490        {
491            "@id": "/labs/harinder-singh/",
492            "status": "current",
493            "title": "Harinder Singh, University of Pittsburgh"
494        }
495    ],
496    "status": "released",
497    "submitted_by": {
498        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
499        "title": "Christopher Mcginnis"
500    },
501    "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days",
502    "targeted_sample_term": {
503        "@id": "/sample-terms/CL_0000980/",
504        "status": "released",
505        "term_name": "plasmablast"
506    },
507    "taxa": "Homo sapiens",
508    "time_post_change": 6,
509    "time_post_change_units": "day",
510    "uuid": "68d99d3f-a9b9-4214-ac76-ba88ff162222",
511    "virtual": false
512}