{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM4287DTSZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4287DTSZ",
"age": "unknown",
"aliases": [
"ansuman-satpathy:wtc11_neuro_D6"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/946a5293-a587-4e28-9de3-e8b24d28ca2d/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2024-07-22T00:26:26.144540+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"ethnicities": [
"Japanese"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS0668NWBP/",
"accession": "IGVFDS0668NWBP",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf11_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS6865MRYQ/",
"accession": "IGVFDS6865MRYQ",
"aliases": [
"ansuman-satpathy:multiseq_igvf11_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5786SCIX/",
"accession": "IGVFDS5786SCIX",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf11_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS8136ENRY/",
"accession": "IGVFDS8136ENRY",
"aliases": [
"ansuman-satpathy:igvf11_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS6138PRFG/",
"accession": "IGVFDS6138PRFG",
"aliases": [
"ansuman-satpathy:multiseq_igvf11_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6943MGVC/",
"accession": "IGVFDS6943MGVC",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf11_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1824DNGD/",
"accession": "IGVFDS1824DNGD",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf11_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6411MOAB/",
"accession": "IGVFDS6411MOAB",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf11_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS9216HFZR/",
"accession": "IGVFDS9216HFZR",
"aliases": [
"ansuman-satpathy:multiseq_igvf11_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8318UIEY/",
"accession": "IGVFDS8318UIEY",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf11_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS2891PUQE/",
"accession": "IGVFDS2891PUQE",
"aliases": [
"ansuman-satpathy:multiseq_igvf11_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8553CHBZ/",
"accession": "IGVFDS8553CHBZ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf11_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4853JTJJ/",
"accession": "IGVFDS4853JTJJ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf11_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
"certificate_identifier": "IP115-21",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM9487HFQW/",
"accession": "IGVFSM9487HFQW",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM8200CKYL/",
"accession": "IGVFSM8200CKYL",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM9367PJMT/",
"accession": "IGVFSM9367PJMT",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM6160ZDRZ/",
"accession": "IGVFSM6160ZDRZ",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM8650OANX/",
"accession": "IGVFSM8650OANX",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:14:04.714026+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"schema_version": "25",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/charles-gersbach/",
"status": "current",
"title": "Charles Gersbach, Duke"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to neuron for 6 days, male, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000540/",
"status": "released",
"term_name": "neuron"
},
"taxa": "Homo sapiens",
"time_post_change": 6,
"time_post_change_units": "day",
"uuid": "36fca2d0-4f9c-441a-be72-a347e820b3f8",
"virtual": false
}