{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM4243BLUK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4243BLUK",
"age": "unknown",
"aliases": [
"ansuman-satpathy:K562_2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4243BLUK](/in-vitro-systems/IGVFSM4243BLUK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4243BLUK/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"cell line"
],
"creation_timestamp": "2024-07-18T23:14:10.299964+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
"accession": "IGVFDO9208RPQQ",
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS3259WGKQ/",
"accession": "IGVFDS3259WGKQ",
"aliases": [
"ansuman-satpathy:multiseq_igvf1_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3744SQTD/",
"accession": "IGVFDS3744SQTD",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf1_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1555ZQOW/",
"accession": "IGVFDS1555ZQOW",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf1_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS8205NXKP/",
"accession": "IGVFDS8205NXKP",
"aliases": [
"ansuman-satpathy:igvf1_analysis_set",
"ansuman-satpathy:igvf1_analysis_set_10x1"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS2200ZALZ/",
"accession": "IGVFDS2200ZALZ",
"aliases": [
"ansuman-satpathy:multiseq_igvf1_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2684OSWL/",
"accession": "IGVFDS2684OSWL",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf1_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3169TEEK/",
"accession": "IGVFDS3169TEEK",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf1_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS1501BSSU/",
"accession": "IGVFDS1501BSSU",
"aliases": [
"ansuman-satpathy:igvf1_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d997512b-2c33-48e5-ae36-a94fd2959427/",
"certificate_identifier": "IP115-19",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM4662QKFQ/",
"accession": "IGVFSM4662QKFQ",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM8645VILQ/",
"accession": "IGVFSM8645VILQ",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:10:28.597964+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"schema_version": "27",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jay-shendure/",
"status": "current",
"title": "Jay Shendure, UW"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "Homo sapiens (female) K562 cell line",
"taxa": "Homo sapiens",
"uuid": "e8cba462-3e40-462a-a77e-1a595dd76086",
"virtual": false
}