fibroblast — IGVFSM3366RUKT

released
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM3366RUKT/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM3366RUKT",
11    "age": "55",
12    "age_units": "year",
13    "aliases": [
14        "chongyuan-luo:C37_day18"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing publication",
20                "detail": "In vitro system [IGVFSM3366RUKT](/in-vitro-systems/IGVFSM3366RUKT/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_sample_missing_publication",
24                "path": "/in-vitro-systems/IGVFSM3366RUKT/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012079/",
30        "component": "networks"
31    },
32    "cell_fate_change_protocol": "/documents/3dff6bfa-965f-4135-9cee-44737a973c5e/",
33    "classifications": [
34        "reprogrammed cell specimen"
35    ],
36    "creation_timestamp": "2024-11-15T19:27:22.714653+00:00",
37    "demultiplexed_to": [],
38    "donors": [
39        {
40            "@id": "/human-donors/IGVFDO0351NYZH/",
41            "accession": "IGVFDO0351NYZH",
42            "status": "released"
43        }
44    ],
45    "file_sets": [
46        {
47            "@id": "/measurement-sets/IGVFDS9564UMAZ/",
48            "accession": "IGVFDS9564UMAZ",
49            "aliases": [
50                "chongyuan-luo:ys3h_snATAC"
51            ],
52            "file_set_type": "experimental data",
53            "lab": {
54                "title": "Kathrin Plath, UCLA"
55            },
56            "preferred_assay_title": "10x multiome",
57            "status": "released",
58            "summary": "single-nucleus ATAC-seq (10x multiome)"
59        },
60        {
61            "@id": "/measurement-sets/IGVFDS4662AALG/",
62            "accession": "IGVFDS4662AALG",
63            "aliases": [
64                "chongyuan-luo:ys3h_snRNA"
65            ],
66            "file_set_type": "experimental data",
67            "lab": {
68                "title": "Kathrin Plath, UCLA"
69            },
70            "preferred_assay_title": "10x multiome",
71            "status": "released",
72            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
73        }
74    ],
75    "institutional_certificates": [
76        {
77            "@id": "/institutional-certificates/18b2e0b6-edec-475b-af8a-0afc04fa43d7/",
78            "certificate_identifier": "IP107-02",
79            "controlled_access": false,
80            "status": "released"
81        }
82    ],
83    "lab": {
84        "@id": "/labs/chongyuan-luo/",
85        "title": "Chongyuan Luo, UCLA"
86    },
87    "lower_bound_age": 55,
88    "lower_bound_age_in_hours": 481800,
89    "multiplexed_in": [
90        {
91            "@id": "/multiplexed-samples/IGVFSM1252FBTF/",
92            "accession": "IGVFSM1252FBTF",
93            "status": "released"
94        }
95    ],
96    "origin_of": [],
97    "originated_from": {
98        "@id": "/primary-cells/IGVFSM0025OPEX/",
99        "accession": "IGVFSM0025OPEX",
100        "status": "released"
101    },
102    "parts": [],
103    "pooled_in": [],
104    "release_timestamp": "2025-03-27T21:33:19.193294+00:00",
105    "sample_terms": [
106        {
107            "@id": "/sample-terms/CL_0000057/",
108            "status": "released",
109            "term_name": "fibroblast"
110        }
111    ],
112    "schema_version": "26",
113    "sex": "unspecified",
114    "sorted_fractions": [],
115    "sources": [
116        {
117            "@id": "/sources/coriell/",
118            "status": "released",
119            "title": "Coriell"
120        }
121    ],
122    "status": "released",
123    "submitted_by": {
124        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
125        "title": "Terence Li"
126    },
127    "submitter_comment": "This sample was originally originated_from /in-vitro-systems/IGVFSM9498BCKY/ which was replaced by a primary cell.",
128    "summary": "Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 18 days",
129    "targeted_sample_term": {
130        "@id": "/sample-terms/EFO_0004905/",
131        "status": "released",
132        "term_name": "induced pluripotent stem cell"
133    },
134    "taxa": "Homo sapiens",
135    "time_post_change": 18,
136    "time_post_change_units": "day",
137    "upper_bound_age": 55,
138    "upper_bound_age_in_hours": 481800,
139    "uuid": "61cd9f8e-a4a6-4f16-996c-4a43d8ae0740",
140    "virtual": false
141}