fibroblast — IGVFSM3163XGNL

released
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM3163XGNL/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM3163XGNL",
11    "age": "1",
12    "age_units": "year",
13    "aliases": [
14        "chongyuan-luo:C38_day7"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing publication",
20                "detail": "In vitro system [IGVFSM3163XGNL](/in-vitro-systems/IGVFSM3163XGNL/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_sample_missing_publication",
24                "path": "/in-vitro-systems/IGVFSM3163XGNL/"
25            }
26        ]
27    },
28    "award": {
29        "@id": "/awards/HG012079/",
30        "component": "networks"
31    },
32    "cell_fate_change_protocol": "/documents/3dff6bfa-965f-4135-9cee-44737a973c5e/",
33    "classifications": [
34        "reprogrammed cell specimen"
35    ],
36    "creation_timestamp": "2024-11-15T19:20:16.080475+00:00",
37    "demultiplexed_to": [],
38    "donors": [
39        {
40            "@id": "/human-donors/IGVFDO2328XGNY/",
41            "accession": "IGVFDO2328XGNY",
42            "status": "released"
43        }
44    ],
45    "file_sets": [
46        {
47            "@id": "/measurement-sets/IGVFDS4954EITX/",
48            "accession": "IGVFDS4954EITX",
49            "aliases": [
50                "chongyuan-luo:pgp_snm3c_C38_day7"
51            ],
52            "file_set_type": "experimental data",
53            "lab": {
54                "title": "Chongyuan Luo, UCLA"
55            },
56            "preferred_assay_title": "snM3C-seq",
57            "status": "released",
58            "summary": "snM3C-seq"
59        },
60        {
61            "@id": "/measurement-sets/IGVFDS4090VRQX/",
62            "accession": "IGVFDS4090VRQX",
63            "aliases": [
64                "chongyuan-luo:pgp_snmct_C38_day7"
65            ],
66            "file_set_type": "experimental data",
67            "lab": {
68                "title": "Chongyuan Luo, UCLA"
69            },
70            "preferred_assay_title": "snMCT-seq",
71            "status": "released",
72            "summary": "snMCT-seq"
73        },
74        {
75            "@id": "/measurement-sets/IGVFDS1744AXNS/",
76            "accession": "IGVFDS1744AXNS",
77            "aliases": [
78                "chongyuan-luo:ys3d_snRNA"
79            ],
80            "file_set_type": "experimental data",
81            "lab": {
82                "title": "Kathrin Plath, UCLA"
83            },
84            "preferred_assay_title": "10x multiome",
85            "status": "released",
86            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
87        },
88        {
89            "@id": "/measurement-sets/IGVFDS9237LVHW/",
90            "accession": "IGVFDS9237LVHW",
91            "aliases": [
92                "chongyuan-luo:ys3d_snATAC"
93            ],
94            "file_set_type": "experimental data",
95            "lab": {
96                "title": "Kathrin Plath, UCLA"
97            },
98            "preferred_assay_title": "10x multiome",
99            "status": "released",
100            "summary": "single-nucleus ATAC-seq (10x multiome)"
101        }
102    ],
103    "institutional_certificates": [
104        {
105            "@id": "/institutional-certificates/18b2e0b6-edec-475b-af8a-0afc04fa43d7/",
106            "certificate_identifier": "IP107-02",
107            "controlled_access": false,
108            "status": "released"
109        }
110    ],
111    "lab": {
112        "@id": "/labs/chongyuan-luo/",
113        "title": "Chongyuan Luo, UCLA"
114    },
115    "lower_bound_age": 1,
116    "lower_bound_age_in_hours": 8760,
117    "multiplexed_in": [
118        {
119            "@id": "/multiplexed-samples/IGVFSM3228GAJR/",
120            "accession": "IGVFSM3228GAJR",
121            "status": "released"
122        }
123    ],
124    "origin_of": [],
125    "originated_from": {
126        "@id": "/primary-cells/IGVFSM4462WZBJ/",
127        "accession": "IGVFSM4462WZBJ",
128        "status": "released"
129    },
130    "parts": [],
131    "pooled_in": [],
132    "release_timestamp": "2025-02-11T00:54:36.743497+00:00",
133    "sample_terms": [
134        {
135            "@id": "/sample-terms/CL_0000057/",
136            "status": "released",
137            "term_name": "fibroblast"
138        }
139    ],
140    "schema_version": "26",
141    "sex": "unspecified",
142    "sorted_fractions": [],
143    "sources": [
144        {
145            "@id": "/sources/coriell/",
146            "status": "released",
147            "title": "Coriell"
148        }
149    ],
150    "status": "released",
151    "submitted_by": {
152        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
153        "title": "Terence Li"
154    },
155    "submitter_comment": "This sample was originally originated_from /in-vitro-systems/IGVFSM6248OWYO/ which was replaced by a primary cell.",
156    "summary": "Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 7 days",
157    "targeted_sample_term": {
158        "@id": "/sample-terms/EFO_0004905/",
159        "status": "released",
160        "term_name": "induced pluripotent stem cell"
161    },
162    "taxa": "Homo sapiens",
163    "time_post_change": 7,
164    "time_post_change_units": "day",
165    "upper_bound_age": 1,
166    "upper_bound_age_in_hours": 8760,
167    "uuid": "f8e50dc9-ba0a-4a26-8f6a-323adb96b90d",
168    "virtual": false
169}