induced pluripotent stem cell — IGVFSM3115GZZM

released
{
    "@context": "/terms/",
    "@id": "/in-vitro-systems/IGVFSM3115GZZM/",
    "@type": [
        "InVitroSystem",
        "Biosample",
        "Sample",
        "Item"
    ],
    "accession": "IGVFSM3115GZZM",
    "age": "unknown",
    "aliases": [
        "buenrostro-bernstein:BioSam 4877_SS-PKR 171"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "missing publication",
                "detail": "In vitro system [IGVFSM3115GZZM](/in-vitro-systems/IGVFSM3115GZZM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/in-vitro-systems/IGVFSM3115GZZM/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011986/",
        "component": "mapping"
    },
    "cell_fate_change_protocol": "/documents/09cd43b1-0727-409b-a6da-c4004d7de732/",
    "cellular_sub_pool": "SS-PKR 171",
    "classifications": [
        "pooled cell specimen",
        "differentiated cell specimen"
    ],
    "creation_timestamp": "2024-08-20T14:49:47.608862+00:00",
    "demultiplexed_to": [],
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    },
    "multiplexed_in": [],
    "origin_of": [],
    "part_of": "/in-vitro-systems/IGVFSM1450MCXE/",
    "parts": [],
    "pooled_in": [],
    "release_timestamp": "2025-04-10T20:56:07.578466+00:00",
    "sample_terms": [
        {
            "@id": "/sample-terms/EFO_0004905/",
            "status": "released",
            "term_name": "induced pluripotent stem cell"
        }
    ],
    "schema_version": "26",
    "sex": "unspecified",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/sources/cirm/",
            "status": "released",
            "title": "California Institute for Regenerative Medicine (CIRM)"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
        "title": "Siddarth Wekhande"
    },
    "submitter_comment": "Day 4 Transition Hepatic Progenitor",
    "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 171)",
    "targeted_sample_term": {
        "@id": "/sample-terms/CL_0002196/",
        "status": "released",
        "term_name": "hepatic oval stem cell"
    },
    "taxa": "Homo sapiens",
    "time_post_change": 4,
    "time_post_change_units": "day",
    "uuid": "61efdbc2-d1a1-4c32-b950-35b16508a364",
    "virtual": false
}