TeloHAEC — IGVFSM2605XXXM

released
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM2605XXXM/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM2605XXXM",
11    "age": "unknown",
12    "aliases": [
13        "ansuman-satpathy:telohaec_0hr_1"
14    ],
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "NTR term ID",
19                "detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_ntr_term_id",
23                "path": "/sample-terms/NTR_0000753/"
24            },
25            {
26                "category": "missing publication",
27                "detail": "In vitro system [IGVFSM2605XXXM](/in-vitro-systems/IGVFSM2605XXXM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
28                "level": 30,
29                "level_name": "INTERNAL_ACTION",
30                "name": "audit_sample_missing_publication",
31                "path": "/in-vitro-systems/IGVFSM2605XXXM/"
32            }
33        ]
34    },
35    "award": {
36        "@id": "/awards/HG012076/",
37        "component": "mapping"
38    },
39    "classifications": [
40        "cell line"
41    ],
42    "creation_timestamp": "2024-07-19T22:03:07.986498+00:00",
43    "demultiplexed_to": [],
44    "donors": [
45        {
46            "@id": "/human-donors/IGVFDO3459DFTW/",
47            "accession": "IGVFDO3459DFTW",
48            "status": "released"
49        }
50    ],
51    "file_sets": [
52        {
53            "@id": "/measurement-sets/IGVFDS5111SPGA/",
54            "accession": "IGVFDS5111SPGA",
55            "aliases": [
56                "ansuman-satpathy:snRNA-seq_igvf2_10x1"
57            ],
58            "file_set_type": "experimental data",
59            "lab": {
60                "title": "Ansuman Satpathy, Stanford"
61            },
62            "preferred_assay_title": "10x multiome with MULTI-seq",
63            "status": "released",
64            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
65        },
66        {
67            "@id": "/measurement-sets/IGVFDS6369SLCB/",
68            "accession": "IGVFDS6369SLCB",
69            "aliases": [
70                "ansuman-satpathy:snATAC-seq_igvf2_10x1"
71            ],
72            "file_set_type": "experimental data",
73            "lab": {
74                "title": "Ansuman Satpathy, Stanford"
75            },
76            "preferred_assay_title": "10x multiome with MULTI-seq",
77            "status": "released",
78            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
79        },
80        {
81            "@id": "/auxiliary-sets/IGVFDS9860EXKL/",
82            "accession": "IGVFDS9860EXKL",
83            "aliases": [
84                "ansuman-satpathy:multiseq_igvf2_10x1"
85            ],
86            "file_set_type": "lipid-conjugated oligo sequencing",
87            "lab": {
88                "title": "Ansuman Satpathy, Stanford"
89            },
90            "status": "released",
91            "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
92        },
93        {
94            "@id": "/analysis-sets/IGVFDS1583PWNS/",
95            "accession": "IGVFDS1583PWNS",
96            "aliases": [
97                "ansuman-satpathy:igvf2_analysis_set"
98            ],
99            "file_set_type": "intermediate analysis",
100            "lab": {
101                "title": "Ansuman Satpathy, Stanford"
102            },
103            "status": "released",
104            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
105        }
106    ],
107    "institutional_certificates": [
108        {
109            "@id": "/institutional-certificates/20743336-7ae0-4e51-ab85-4ef4401b9b7d/",
110            "certificate_identifier": "IP115-16",
111            "controlled_access": false,
112            "status": "released"
113        }
114    ],
115    "lab": {
116        "@id": "/labs/ansuman-satpathy/",
117        "title": "Ansuman Satpathy, Stanford"
118    },
119    "multiplexed_in": [
120        {
121            "@id": "/multiplexed-samples/IGVFSM3646QLDO/",
122            "accession": "IGVFSM3646QLDO",
123            "status": "released"
124        }
125    ],
126    "origin_of": [],
127    "parts": [],
128    "pooled_in": [],
129    "protocols": [
130        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
131    ],
132    "release_timestamp": "2025-03-07T01:10:41.439867+00:00",
133    "sample_terms": [
134        {
135            "@id": "/sample-terms/NTR_0000753/",
136            "status": "released",
137            "term_name": "TeloHAEC"
138        }
139    ],
140    "schema_version": "26",
141    "sex": "female",
142    "sorted_fractions": [],
143    "sources": [
144        {
145            "@id": "/labs/guillaume-lettre/",
146            "status": "current",
147            "title": "Guillaume Lettre, MHI"
148        }
149    ],
150    "status": "released",
151    "submitted_by": {
152        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
153        "title": "Christopher Mcginnis"
154    },
155    "summary": "Homo sapiens (female) TeloHAEC cell line",
156    "taxa": "Homo sapiens",
157    "uuid": "717a195f-4ff6-49ae-88c8-5b4b6c58a863",
158    "virtual": false
159}