{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM2391BHAW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2391BHAW",
"age": "unknown",
"aliases": [
"ansuman-satpathy:wtc11_M0mac_1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2391BHAW](/in-vitro-systems/IGVFSM2391BHAW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2391BHAW/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"cell line"
],
"creation_timestamp": "2024-07-21T23:21:17.134176+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"ethnicities": [
"Japanese"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS9581AWPV/",
"accession": "IGVFDS9581AWPV",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf4_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS8226YTNI/",
"accession": "IGVFDS8226YTNI",
"aliases": [
"ansuman-satpathy:multiseq_igvf4_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2045SDGW/",
"accession": "IGVFDS2045SDGW",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf4_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS2649QXJV/",
"accession": "IGVFDS2649QXJV",
"aliases": [
"ansuman-satpathy:igvf4_analysis_set",
"ansuman-satpathy:igvf4_analysis_set_10x1"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS6940QNAZ/",
"accession": "IGVFDS6940QNAZ",
"aliases": [
"ansuman-satpathy:multiseq_igvf4_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8256MZOE/",
"accession": "IGVFDS8256MZOE",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf4_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6995DUBD/",
"accession": "IGVFDS6995DUBD",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf4_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS3751NDQI/",
"accession": "IGVFDS3751NDQI",
"aliases": [
"ansuman-satpathy:igvf4_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
"certificate_identifier": "IP115-21",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM8594ZCZM/",
"accession": "IGVFSM8594ZCZM",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM7068ZFMY/",
"accession": "IGVFSM7068ZFMY",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:11:26.423475+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"schema_version": "26",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/michael-bassik/",
"status": "current",
"title": "Michael Bassik, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "Homo sapiens (male) GM25256 (WTC-11) cell line",
"taxa": "Homo sapiens",
"uuid": "bc991c18-cd47-4cea-8119-1daa531aa7d0",
"virtual": false
}