{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM2168OGVH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2168OGVH",
"age": "unknown",
"aliases": [
"ansuman-satpathy:village_pancreatic_de_2"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/60545733-f9e6-4b49-a617-39d8ff5ea783/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2025-02-03T21:07:24.850875+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO9904ZSML/",
"accession": "IGVFDO9904ZSML",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO1221XJAX/",
"accession": "IGVFDO1221XJAX",
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},
{
"@id": "/human-donors/IGVFDO2650AGWB/",
"accession": "IGVFDO2650AGWB",
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},
{
"@id": "/human-donors/IGVFDO7470LCGC/",
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},
{
"@id": "/human-donors/IGVFDO6162MIWK/",
"accession": "IGVFDO6162MIWK",
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},
{
"@id": "/human-donors/IGVFDO5656YCPC/",
"accession": "IGVFDO5656YCPC",
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},
{
"@id": "/human-donors/IGVFDO0183MFIP/",
"accession": "IGVFDO0183MFIP",
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"European"
],
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},
{
"@id": "/human-donors/IGVFDO7813GMND/",
"accession": "IGVFDO7813GMND",
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"European",
"Hispanic"
],
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},
{
"@id": "/human-donors/IGVFDO9716HDYX/",
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"African American"
],
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},
{
"@id": "/human-donors/IGVFDO6441FSJH/",
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"African American"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO5614PTYQ/",
"accession": "IGVFDO5614PTYQ",
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"African American"
],
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},
{
"@id": "/human-donors/IGVFDO3755LIBB/",
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"African American"
],
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},
{
"@id": "/human-donors/IGVFDO2379DTAU/",
"accession": "IGVFDO2379DTAU",
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"African American"
],
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},
{
"@id": "/human-donors/IGVFDO2817PSCX/",
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"European"
],
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},
{
"@id": "/human-donors/IGVFDO4532PFAJ/",
"accession": "IGVFDO4532PFAJ",
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"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO7650ICPB/",
"accession": "IGVFDO7650ICPB",
"ethnicities": [
"African American"
],
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},
{
"@id": "/human-donors/IGVFDO9617JBWJ/",
"accession": "IGVFDO9617JBWJ",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2620HPCX/",
"accession": "IGVFDO2620HPCX",
"ethnicities": [
"Hispanic"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2492CCQG/",
"accession": "IGVFDO2492CCQG",
"ethnicities": [
"European"
],
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},
{
"@id": "/human-donors/IGVFDO4134ZWBU/",
"accession": "IGVFDO4134ZWBU",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO8893DMFF/",
"accession": "IGVFDO8893DMFF",
"ethnicities": [
"European"
],
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},
{
"@id": "/human-donors/IGVFDO2750DZPB/",
"accession": "IGVFDO2750DZPB",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO5729MXSO/",
"accession": "IGVFDO5729MXSO",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO6169GISQ/",
"accession": "IGVFDO6169GISQ",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO4452ZQSF/",
"accession": "IGVFDO4452ZQSF",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO8129FWUV/",
"accession": "IGVFDO8129FWUV",
"ethnicities": [
"African American"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO7670TOWV/",
"accession": "IGVFDO7670TOWV",
"ethnicities": [
"Pacific Islander"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO8977PNMK/",
"accession": "IGVFDO8977PNMK",
"ethnicities": [
"Pacific Islander"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO1964RNHE/",
"accession": "IGVFDO1964RNHE",
"ethnicities": [
"Pacific Islander",
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO0720ONIQ/",
"accession": "IGVFDO0720ONIQ",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO4876ENMD/",
"accession": "IGVFDO4876ENMD",
"ethnicities": [
"African American"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO8129UUAA/",
"accession": "IGVFDO8129UUAA",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO0324ZSAY/",
"accession": "IGVFDO0324ZSAY",
"ethnicities": [
"African American"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO1364EAZP/",
"accession": "IGVFDO1364EAZP",
"ethnicities": [
"African American"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO1038DAII/",
"accession": "IGVFDO1038DAII",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO7140TLQJ/",
"accession": "IGVFDO7140TLQJ",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO7725MEWB/",
"accession": "IGVFDO7725MEWB",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO0657EMJH/",
"accession": "IGVFDO0657EMJH",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2965ZTUG/",
"accession": "IGVFDO2965ZTUG",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO4001VEAC/",
"accession": "IGVFDO4001VEAC",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2718IDDQ/",
"accession": "IGVFDO2718IDDQ",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO8315PGTI/",
"accession": "IGVFDO8315PGTI",
"status": "released"
}
],
"file_sets": [
{
"@id": "/curated-sets/IGVFDS5491YPLK/",
"accession": "IGVFDS5491YPLK",
"aliases": [
"ansuman-satpathy:curated_set_barcode_map_igvf16"
],
"file_set_type": "barcodes",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "in progress",
"summary": "barcodes"
},
{
"@id": "/auxiliary-sets/IGVFDS8561MVXS/",
"accession": "IGVFDS8561MVXS",
"aliases": [
"ansuman-satpathy:multiseq_igvf16_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4595RDQM/",
"accession": "IGVFDS4595RDQM",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf16_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6783TOHX/",
"accession": "IGVFDS6783TOHX",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf16_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS4570PZIO/",
"accession": "IGVFDS4570PZIO",
"aliases": [
"ansuman-satpathy:igvf16_analysis_set_10x4"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS8698TENC/",
"accession": "IGVFDS8698TENC",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf16_10x5"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS0008XKIZ/",
"accession": "IGVFDS0008XKIZ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf16_10x5"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS7766RXOL/",
"accession": "IGVFDS7766RXOL",
"aliases": [
"ansuman-satpathy:multiseq_igvf16_10x5"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS4086WMME/",
"accession": "IGVFDS4086WMME",
"aliases": [
"ansuman-satpathy:igvf16_analysis_set_10x5"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS2071POUF/",
"accession": "IGVFDS2071POUF",
"aliases": [
"ansuman-satpathy:multiseq_igvf16_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS7129TVLQ/",
"accession": "IGVFDS7129TVLQ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf16_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4158FYXM/",
"accession": "IGVFDS4158FYXM",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf16_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS7388FOPN/",
"accession": "IGVFDS7388FOPN",
"aliases": [
"ansuman-satpathy:igvf16_analysis_set",
"ansuman-satpathy:igvf16_analysis_set_10x1"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS3265EOGA/",
"accession": "IGVFDS3265EOGA",
"aliases": [
"ansuman-satpathy:multiseq_igvf16_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9875NBZW/",
"accession": "IGVFDS9875NBZW",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf16_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1125HXCL/",
"accession": "IGVFDS1125HXCL",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf16_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS7649PCRX/",
"accession": "IGVFDS7649PCRX",
"aliases": [
"ansuman-satpathy:igvf16_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS8133HXKO/",
"accession": "IGVFDS8133HXKO",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf16_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4856BVTB/",
"accession": "IGVFDS4856BVTB",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf16_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS1643UTWX/",
"accession": "IGVFDS1643UTWX",
"aliases": [
"ansuman-satpathy:multiseq_igvf16_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS9825AFPQ/",
"accession": "IGVFDS9825AFPQ",
"aliases": [
"ansuman-satpathy:igvf16_analysis_set_10x3"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/1926d993-629d-42d9-a962-f391ea6ee18f/",
"certificate_identifier": "IP115-23",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM5245KVZO/",
"accession": "IGVFSM5245KVZO",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM1943HMCZ/",
"accession": "IGVFSM1943HMCZ",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM3549KFGD/",
"accession": "IGVFSM3549KFGD",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM9574RAZA/",
"accession": "IGVFSM9574RAZA",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM5332SKYG/",
"accession": "IGVFSM5332SKYG",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM9802PLYK/",
"accession": "IGVFSM9802PLYK",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-22T00:40:38.763602+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004905/",
"status": "released",
"term_name": "induced pluripotent stem cell"
}
],
"schema_version": "26",
"sex": "mixed",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/danwei-huangfu/",
"status": "current",
"title": "Danwei Huangfu, MSKCC"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0000006/",
"status": "released",
"term_name": "islet of Langerhans"
},
"taxa": "Homo sapiens",
"time_post_change": 3,
"time_post_change_units": "day",
"uuid": "8c8002f8-c01b-4bc0-8c86-8bd2971fd602",
"virtual": false
}