{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM2157GQQV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2157GQQV",
"age": "unknown",
"aliases": [
"ansuman-satpathy:wtc11_cardio_d0_1"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/37fa2e59-2576-47f2-b63f-aadc3276c1a6/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2024-07-21T23:09:07.309150+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"ethnicities": [
"Japanese"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4602PSGH/",
"accession": "IGVFDS4602PSGH",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2422JHIN/",
"accession": "IGVFDS2422JHIN",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS3579YOKV/",
"accession": "IGVFDS3579YOKV",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS9170BNTS/",
"accession": "IGVFDS9170BNTS",
"aliases": [
"ansuman-satpathy:igvf3_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS8466CGYE/",
"accession": "IGVFDS8466CGYE",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS0470ONXA/",
"accession": "IGVFDS0470ONXA",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4208ZWQY/",
"accession": "IGVFDS4208ZWQY",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2000OICT/",
"accession": "IGVFDS2000OICT",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS5893VQJY/",
"accession": "IGVFDS5893VQJY",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS8334UDJX/",
"accession": "IGVFDS8334UDJX",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1983YORK/",
"accession": "IGVFDS1983YORK",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS5693MIIK/",
"accession": "IGVFDS5693MIIK",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1843ABDU/",
"accession": "IGVFDS1843ABDU",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
"certificate_identifier": "IP115-21",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM8818QZOF/",
"accession": "IGVFSM8818QZOF",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM8265VEJP/",
"accession": "IGVFSM8265VEJP",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM4259POAT/",
"accession": "IGVFSM4259POAT",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM7454SJSO/",
"accession": "IGVFSM7454SJSO",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM5169IKMX/",
"accession": "IGVFSM5169IKMX",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:10:50.148733+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"schema_version": "25",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/lars-steinmetz/",
"status": "current",
"title": "Lars Steinmetz, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "GM25256 (WTC-11) differentiated cell specimen, male, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens",
"time_post_change": 0,
"time_post_change_units": "day",
"uuid": "a58b35eb-9339-4c54-9dda-7dd96e458833",
"virtual": false
}