IMR-90 — IGVFSM0805XOHS

released
1{
2    "@context": "/terms/",
3    "@id": "/in-vitro-systems/IGVFSM0805XOHS/",
4    "@type": [
5        "InVitroSystem",
6        "Biosample",
7        "Sample",
8        "Item"
9    ],
10    "accession": "IGVFSM0805XOHS",
11    "age": "unknown",
12    "aliases": [
13        "ansuman-satpathy:imr90_1"
14    ],
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "missing publication",
19                "detail": "In vitro system [IGVFSM0805XOHS](/in-vitro-systems/IGVFSM0805XOHS/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_sample_missing_publication",
23                "path": "/in-vitro-systems/IGVFSM0805XOHS/"
24            }
25        ]
26    },
27    "award": {
28        "@id": "/awards/HG012076/",
29        "component": "mapping"
30    },
31    "classifications": [
32        "cell line"
33    ],
34    "creation_timestamp": "2025-01-27T22:12:04.467250+00:00",
35    "demultiplexed_to": [],
36    "donors": [
37        {
38            "@id": "/human-donors/IGVFDO4200NZSV/",
39            "accession": "IGVFDO4200NZSV",
40            "ethnicities": [
41                "European"
42            ],
43            "status": "released"
44        }
45    ],
46    "file_sets": [
47        {
48            "@id": "/auxiliary-sets/IGVFDS7168GITK/",
49            "accession": "IGVFDS7168GITK",
50            "aliases": [
51                "ansuman-satpathy:multiseq_igvf18_10x1"
52            ],
53            "file_set_type": "lipid-conjugated oligo sequencing",
54            "lab": {
55                "title": "Ansuman Satpathy, Stanford"
56            },
57            "status": "released",
58            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
59        },
60        {
61            "@id": "/measurement-sets/IGVFDS1210CYWP/",
62            "accession": "IGVFDS1210CYWP",
63            "aliases": [
64                "ansuman-satpathy:snRNA-seq_igvf18_10x1"
65            ],
66            "file_set_type": "experimental data",
67            "lab": {
68                "title": "Ansuman Satpathy, Stanford"
69            },
70            "preferred_assay_title": "10x multiome with MULTI-seq",
71            "status": "released",
72            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
73        },
74        {
75            "@id": "/measurement-sets/IGVFDS1427CODJ/",
76            "accession": "IGVFDS1427CODJ",
77            "aliases": [
78                "ansuman-satpathy:snATAC-seq_igvf18_10x1"
79            ],
80            "file_set_type": "experimental data",
81            "lab": {
82                "title": "Ansuman Satpathy, Stanford"
83            },
84            "preferred_assay_title": "10x multiome with MULTI-seq",
85            "status": "released",
86            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
87        },
88        {
89            "@id": "/analysis-sets/IGVFDS4963SRAJ/",
90            "accession": "IGVFDS4963SRAJ",
91            "aliases": [
92                "ansuman-satpathy:igvf18_analysis_set",
93                "ansuman-satpathy:igvf18_analysis_set_10x1"
94            ],
95            "file_set_type": "intermediate analysis",
96            "lab": {
97                "title": "Ansuman Satpathy, Stanford"
98            },
99            "status": "released",
100            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
101        },
102        {
103            "@id": "/measurement-sets/IGVFDS7744TQIF/",
104            "accession": "IGVFDS7744TQIF",
105            "aliases": [
106                "ansuman-satpathy:snATAC-seq_igvf18_10x2"
107            ],
108            "file_set_type": "experimental data",
109            "lab": {
110                "title": "Ansuman Satpathy, Stanford"
111            },
112            "preferred_assay_title": "10x multiome with MULTI-seq",
113            "status": "released",
114            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
115        },
116        {
117            "@id": "/auxiliary-sets/IGVFDS5027XUOE/",
118            "accession": "IGVFDS5027XUOE",
119            "aliases": [
120                "ansuman-satpathy:multiseq_igvf18_10x2"
121            ],
122            "file_set_type": "lipid-conjugated oligo sequencing",
123            "lab": {
124                "title": "Ansuman Satpathy, Stanford"
125            },
126            "status": "released",
127            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
128        },
129        {
130            "@id": "/measurement-sets/IGVFDS9859SAHD/",
131            "accession": "IGVFDS9859SAHD",
132            "aliases": [
133                "ansuman-satpathy:snRNA-seq_igvf18_10x2"
134            ],
135            "file_set_type": "experimental data",
136            "lab": {
137                "title": "Ansuman Satpathy, Stanford"
138            },
139            "preferred_assay_title": "10x multiome with MULTI-seq",
140            "status": "released",
141            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
142        },
143        {
144            "@id": "/analysis-sets/IGVFDS7252MTQC/",
145            "accession": "IGVFDS7252MTQC",
146            "aliases": [
147                "ansuman-satpathy:igvf18_analysis_set_10x2"
148            ],
149            "file_set_type": "intermediate analysis",
150            "lab": {
151                "title": "Ansuman Satpathy, Stanford"
152            },
153            "status": "released",
154            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
155        },
156        {
157            "@id": "/measurement-sets/IGVFDS0786WISU/",
158            "accession": "IGVFDS0786WISU",
159            "aliases": [
160                "ansuman-satpathy:snRNA-seq_igvf18_10x3"
161            ],
162            "file_set_type": "experimental data",
163            "lab": {
164                "title": "Ansuman Satpathy, Stanford"
165            },
166            "preferred_assay_title": "10x multiome with MULTI-seq",
167            "status": "released",
168            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
169        },
170        {
171            "@id": "/measurement-sets/IGVFDS9563IPMU/",
172            "accession": "IGVFDS9563IPMU",
173            "aliases": [
174                "ansuman-satpathy:snATAC-seq_igvf18_10x3"
175            ],
176            "file_set_type": "experimental data",
177            "lab": {
178                "title": "Ansuman Satpathy, Stanford"
179            },
180            "preferred_assay_title": "10x multiome with MULTI-seq",
181            "status": "released",
182            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
183        },
184        {
185            "@id": "/auxiliary-sets/IGVFDS2437JWUW/",
186            "accession": "IGVFDS2437JWUW",
187            "aliases": [
188                "ansuman-satpathy:multiseq_igvf18_10x3"
189            ],
190            "file_set_type": "lipid-conjugated oligo sequencing",
191            "lab": {
192                "title": "Ansuman Satpathy, Stanford"
193            },
194            "status": "released",
195            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
196        },
197        {
198            "@id": "/analysis-sets/IGVFDS5242AKVI/",
199            "accession": "IGVFDS5242AKVI",
200            "aliases": [
201                "ansuman-satpathy:igvf18_analysis_set_10x3"
202            ],
203            "file_set_type": "intermediate analysis",
204            "lab": {
205                "title": "Ansuman Satpathy, Stanford"
206            },
207            "status": "released",
208            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
209        },
210        {
211            "@id": "/measurement-sets/IGVFDS4170WANT/",
212            "accession": "IGVFDS4170WANT",
213            "aliases": [
214                "ansuman-satpathy:snRNA-seq_igvf18_10x4"
215            ],
216            "file_set_type": "experimental data",
217            "lab": {
218                "title": "Ansuman Satpathy, Stanford"
219            },
220            "preferred_assay_title": "10x multiome with MULTI-seq",
221            "status": "released",
222            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
223        },
224        {
225            "@id": "/auxiliary-sets/IGVFDS6039YTCL/",
226            "accession": "IGVFDS6039YTCL",
227            "aliases": [
228                "ansuman-satpathy:multiseq_igvf18_10x4"
229            ],
230            "file_set_type": "lipid-conjugated oligo sequencing",
231            "lab": {
232                "title": "Ansuman Satpathy, Stanford"
233            },
234            "status": "released",
235            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
236        },
237        {
238            "@id": "/measurement-sets/IGVFDS9305YTYU/",
239            "accession": "IGVFDS9305YTYU",
240            "aliases": [
241                "ansuman-satpathy:snATAC-seq_igvf18_10x4"
242            ],
243            "file_set_type": "experimental data",
244            "lab": {
245                "title": "Ansuman Satpathy, Stanford"
246            },
247            "preferred_assay_title": "10x multiome with MULTI-seq",
248            "status": "released",
249            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
250        },
251        {
252            "@id": "/analysis-sets/IGVFDS7381NTBZ/",
253            "accession": "IGVFDS7381NTBZ",
254            "aliases": [
255                "ansuman-satpathy:igvf18_analysis_set_10x4"
256            ],
257            "file_set_type": "intermediate analysis",
258            "lab": {
259                "title": "Ansuman Satpathy, Stanford"
260            },
261            "status": "released",
262            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
263        }
264    ],
265    "institutional_certificates": [
266        {
267            "@id": "/institutional-certificates/4ff60cda-a674-443c-8864-009fa16b9f43/",
268            "certificate_identifier": "IP115-25",
269            "controlled_access": false,
270            "data_use_limitation_summary": "No limitations",
271            "status": "in progress"
272        }
273    ],
274    "lab": {
275        "@id": "/labs/ansuman-satpathy/",
276        "title": "Ansuman Satpathy, Stanford"
277    },
278    "multiplexed_in": [
279        {
280            "@id": "/multiplexed-samples/IGVFSM4392KEFB/",
281            "accession": "IGVFSM4392KEFB",
282            "status": "released"
283        },
284        {
285            "@id": "/multiplexed-samples/IGVFSM9642EHZY/",
286            "accession": "IGVFSM9642EHZY",
287            "status": "released"
288        },
289        {
290            "@id": "/multiplexed-samples/IGVFSM5815WALV/",
291            "accession": "IGVFSM5815WALV",
292            "status": "released"
293        },
294        {
295            "@id": "/multiplexed-samples/IGVFSM3125MLLP/",
296            "accession": "IGVFSM3125MLLP",
297            "status": "released"
298        }
299    ],
300    "origin_of": [],
301    "parts": [],
302    "pooled_in": [],
303    "protocols": [
304        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
305    ],
306    "release_timestamp": "2025-03-07T01:17:57.185768+00:00",
307    "sample_terms": [
308        {
309            "@id": "/sample-terms/EFO_0001196/",
310            "status": "released",
311            "term_name": "IMR-90"
312        }
313    ],
314    "schema_version": "27",
315    "sex": "female",
316    "sorted_fractions": [],
317    "sources": [
318        {
319            "@id": "/labs/jesse-engreitz/",
320            "status": "current",
321            "title": "Jesse Engreitz, Stanford"
322        }
323    ],
324    "status": "released",
325    "submitted_by": {
326        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
327        "title": "Christopher Mcginnis"
328    },
329    "summary": "Homo sapiens (female) IMR-90 cell line",
330    "taxa": "Homo sapiens",
331    "uuid": "2698111c-09b2-4c38-8b05-32432af7db90",
332    "virtual": false
333}