{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM0720XHJA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0720XHJA",
"age": "unknown",
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM0720XHJA](/in-vitro-systems/IGVFSM0720XHJA/) has in progress subobject document [71692768-fa80-43e8-a500-2c885a6f4503](/documents/71692768-fa80-43e8-a500-2c885a6f4503/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM0720XHJA/"
},
{
"category": "mismatched status",
"detail": "Released construct library set [IGVFDS9668QVZD](/construct-library-sets/IGVFDS9668QVZD/) has in progress subobject tabular file [IGVFFI4914OUJH](/tabular-files/IGVFFI4914OUJH/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/construct-library-sets/IGVFDS9668QVZD/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"cell_fate_change_protocol": "/documents/71692768-fa80-43e8-a500-2c885a6f4503/",
"classifications": [
"differentiated cell specimen",
"pooled cell specimen"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS9668QVZD/",
"accession": "IGVFDS9668QVZD",
"associated_phenotypes": [
{
"@id": "/phenotype-terms/MONDO_0005258/",
"status": "released",
"term_name": "autism spectrum disorder"
}
],
"file_set_type": "reporter library",
"status": "released"
}
],
"creation_timestamp": "2024-03-19T14:13:56.456265+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS1253DLDL/",
"accession": "IGVFDS1253DLDL",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder"
},
{
"@id": "/measurement-sets/IGVFDS4302OZMS/",
"accession": "IGVFDS4302OZMS",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder"
},
{
"@id": "/measurement-sets/IGVFDS1673EWYY/",
"accession": "IGVFDS1673EWYY",
"file_set_type": "experimental data",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"preferred_assay_title": "lentiMPRA",
"status": "released",
"summary": "lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder"
},
{
"@id": "/analysis-sets/IGVFDS2165KBMD/",
"accession": "IGVFDS2165KBMD",
"file_set_type": "principal analysis",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"status": "released",
"summary": "lentiMPRA: reporter experiment, reporter experiment barcode"
},
{
"@id": "/analysis-sets/IGVFDS5394QLIN/",
"accession": "IGVFDS5394QLIN",
"file_set_type": "principal analysis",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"status": "released",
"summary": "lentiMPRA: reporter genomic variant effects"
},
{
"@id": "/analysis-sets/IGVFDS5941TKID/",
"accession": "IGVFDS5941TKID",
"file_set_type": "principal analysis",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"status": "in progress",
"summary": "lentiMPRA: reporter elements, reporter genomic element effects"
},
{
"@id": "/analysis-sets/IGVFDS0501NLIA/",
"accession": "IGVFDS0501NLIA",
"file_set_type": "principal analysis",
"lab": {
"title": "Nadav Ahituv, UCSF"
},
"status": "in progress",
"summary": "lentiMPRA: reporter genomic variant effects, reporter variants"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/nadav-ahituv/",
"title": "Nadav Ahituv, UCSF"
},
"multiplexed_in": [],
"notes": "This object's classifications was previously pooled cell specimen. It has been upgraded to both cell line and pooled cell specimen classifications by an upgrade.",
"nucleic_acid_delivery": "lentiviral transduction",
"origin_of": [],
"parts": [],
"pooled_in": [],
"publications": [
{
"@id": "/publications/a9a39fe1-5a47-429f-86d6-a4013dbeba2d/",
"publication_identifiers": [
"PMID:36834916"
],
"status": "released"
}
],
"release_timestamp": "2025-01-09T20:34:27.279532+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"schema_version": "26",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/nadav-ahituv/",
"status": "current",
"title": "Nadav Ahituv, UCSF"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/696ac72c-9846-469d-8bf1-8bd01856d4ba/",
"title": "Thorben Maass"
},
"summary": "Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000679/",
"status": "released",
"term_name": "glutamatergic neuron"
},
"taxa": "Homo sapiens",
"time_post_change": 7,
"time_post_change_units": "day",
"url": "http://purl.obolibrary.org/obo/CL_0011020",
"uuid": "4a5358b3-1731-420c-ba73-69cff0ad6c64",
"virtual": false
}