{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM0612UJUB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0612UJUB",
"age": "unknown",
"aliases": [
"ansuman-satpathy:h9_neuron_d6_1"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/c314f30f-385f-4aea-a2b4-3edc4b973777/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2024-07-21T23:31:26.459666+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO2718IDDQ/",
"accession": "IGVFDO2718IDDQ",
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS5515DQMD/",
"accession": "IGVFDS5515DQMD",
"aliases": [
"ansuman-satpathy:multiseq_igvf5_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS0408SNGQ/",
"accession": "IGVFDS0408SNGQ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf5_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8186IYBF/",
"accession": "IGVFDS8186IYBF",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf5_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS8898JDCK/",
"accession": "IGVFDS8898JDCK",
"aliases": [
"ansuman-satpathy:igvf5_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/measurement-sets/IGVFDS1261CJEE/",
"accession": "IGVFDS1261CJEE",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf5_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS7545KQAS/",
"accession": "IGVFDS7545KQAS",
"aliases": [
"ansuman-satpathy:multiseq_igvf5_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6262VTZI/",
"accession": "IGVFDS6262VTZI",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf5_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3184KNYJ/",
"accession": "IGVFDS3184KNYJ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf5_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS3303TULU/",
"accession": "IGVFDS3303TULU",
"aliases": [
"ansuman-satpathy:multiseq_igvf5_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1201SHMG/",
"accession": "IGVFDS1201SHMG",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf5_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4942IIYS/",
"accession": "IGVFDS4942IIYS",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf5_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9743PIFM/",
"accession": "IGVFDS9743PIFM",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf5_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS5364XXRU/",
"accession": "IGVFDS5364XXRU",
"aliases": [
"ansuman-satpathy:multiseq_igvf5_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/eaf8c672-701d-4aee-9108-8d64c472d20e/",
"certificate_identifier": "IP115-14",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM3202SKCS/",
"accession": "IGVFSM3202SKCS",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM7875RUGJ/",
"accession": "IGVFSM7875RUGJ",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM3106AWHF/",
"accession": "IGVFSM3106AWHF",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM1143WWLK/",
"accession": "IGVFSM1143WWLK",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM1253CALV/",
"accession": "IGVFSM1253CALV",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:11:46.634287+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003045/",
"status": "released",
"term_name": "H9"
}
],
"schema_version": "25",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/gary-hon/",
"status": "current",
"title": "Gary Hon, UT"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000540/",
"status": "released",
"term_name": "neuron"
},
"taxa": "Homo sapiens",
"time_post_change": 6,
"time_post_change_units": "day",
"uuid": "48daab1a-804e-4387-a2bf-f81d5ff83b69",
"virtual": false
}