{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM0387IPUP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0387IPUP",
"age": "unknown",
"aliases": [
"ansuman-satpathy:k562_CRISPRi_1"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"classifications": [
"cell line"
],
"creation_timestamp": "2024-07-22T00:23:38.679500+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
"accession": "IGVFDO9208RPQQ",
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS6521MNHG/",
"accession": "IGVFDS6521MNHG",
"aliases": [
"ansuman-satpathy:multiseq_igvf10_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for interference single-nucleus ATAC-seq (10x multiome with MULTI-seq), interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1013HCXI/",
"accession": "IGVFDS1013HCXI",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf10_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "interference single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9139TBCB/",
"accession": "IGVFDS9139TBCB",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf10_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS2018URDY/",
"accession": "IGVFDS2018URDY",
"aliases": [
"ansuman-satpathy:igvf10_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/analysis-sets/IGVFDS5839UBFZ/",
"accession": "IGVFDS5839UBFZ",
"aliases": [
"ansuman-satpathy:IGVFDS1013HCXI_IGVFDS3910GBDQ_IGVFDS9139TBCB_IGVFDS2246RAZO_analysis",
"jesse-engreitz:IGVFDS1013HCXI_IGVFDS3910GBDQ_IGVFDS9139TBCB_IGVFDS2246RAZO_analysis"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jesse Engreitz, Stanford"
},
"status": "in progress",
"summary": "10x multiome with MULTI-seq"
},
{
"@id": "/auxiliary-sets/IGVFDS9295POCI/",
"accession": "IGVFDS9295POCI",
"aliases": [
"ansuman-satpathy:multiseq_igvf10_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for interference single-nucleus ATAC-seq (10x multiome with MULTI-seq), interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3910GBDQ/",
"accession": "IGVFDS3910GBDQ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf10_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "interference single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2246RAZO/",
"accession": "IGVFDS2246RAZO",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf10_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/4ff60cda-a674-443c-8864-009fa16b9f43/",
"certificate_identifier": "IP115-25",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [
{
"@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
"cas": "dCas9",
"cas_species": "Streptococcus pyogenes (Sp)",
"fused_domain": "KOX1-KRAB",
"modality": "interference",
"status": "released",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM0539NUPM/",
"accession": "IGVFSM0539NUPM",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM4547BFMA/",
"accession": "IGVFSM4547BFMA",
"status": "released"
}
],
"origin_of": [],
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:13:44.233489+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"schema_version": "25",
"sex": "female",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jesse-engreitz/",
"status": "current",
"title": "Jesse Engreitz, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB",
"taxa": "Homo sapiens",
"uuid": "3b905881-f0e7-42f4-bb07-4663e16c8245",
"virtual": false
}