{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM0061CGCM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0061CGCM",
"age": "unknown",
"aliases": [
"ansuman-satpathy:wtc11_hepato_d13_1"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/b1e37dfd-ca3a-45b1-b4ec-764dd042a363/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2025-01-27T22:11:45.533899+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"ethnicities": [
"Japanese"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/curated-sets/IGVFDS3553WJDD/",
"accession": "IGVFDS3553WJDD",
"aliases": [
"ansuman-satpathy:curated_set_barcode_map_igvf15"
],
"file_set_type": "barcodes",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "in progress",
"summary": "barcodes"
},
{
"@id": "/measurement-sets/IGVFDS4338ZSWY/",
"accession": "IGVFDS4338ZSWY",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf15_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS2440YLWS/",
"accession": "IGVFDS2440YLWS",
"aliases": [
"ansuman-satpathy:multiseq_igvf15_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2623QODS/",
"accession": "IGVFDS2623QODS",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf15_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS6039JXBR/",
"accession": "IGVFDS6039JXBR",
"aliases": [
"ansuman-satpathy:igvf15_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
{
"@id": "/auxiliary-sets/IGVFDS3069YZFY/",
"accession": "IGVFDS3069YZFY",
"aliases": [
"ansuman-satpathy:multiseq_igvf15_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3345HOBS/",
"accession": "IGVFDS3345HOBS",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf15_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2872HKZZ/",
"accession": "IGVFDS2872HKZZ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf15_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS8920TKBO/",
"accession": "IGVFDS8920TKBO",
"aliases": [
"ansuman-satpathy:multiseq_igvf15_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8563NWFI/",
"accession": "IGVFDS8563NWFI",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf15_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8608TBPZ/",
"accession": "IGVFDS8608TBPZ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf15_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
"certificate_identifier": "IP115-21",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM2174QALS/",
"accession": "IGVFSM2174QALS",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM0825LHRL/",
"accession": "IGVFSM0825LHRL",
"status": "released"
},
{
"@id": "/multiplexed-samples/IGVFSM1624SZQN/",
"accession": "IGVFSM1624SZQN",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM7732XYNQ/",
"accession": "IGVFSM7732XYNQ",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:14:49.223293+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"schema_version": "25",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/charles-gersbach/",
"status": "current",
"title": "Charles Gersbach, Duke"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/UBERON_0002107/",
"status": "released",
"term_name": "liver"
},
"taxa": "Homo sapiens",
"time_post_change": 13,
"time_post_change_units": "day",
"uuid": "65d5ea43-627f-419a-92c8-10ef56834802",
"virtual": false
}