{
"@context": "/terms/",
"@id": "/in-vitro-systems/IGVFSM0057LORX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0057LORX",
"age": "unknown",
"aliases": [
"ansuman-satpathy:wtc11_endo_d3_5"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"cell_fate_change_protocol": "/documents/6f35efa1-303b-4bd6-80c5-2c56d2cc23db/",
"classifications": [
"differentiated cell specimen"
],
"creation_timestamp": "2024-07-19T22:32:28.487004+00:00",
"demultiplexed_to": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"ethnicities": [
"Japanese"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS4882ESVG/",
"accession": "IGVFDS4882ESVG",
"aliases": [
"ansuman-satpathy:multiseq_igvf0_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6243XJYN/",
"accession": "IGVFDS6243XJYN",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf0_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS7482RDGX/",
"accession": "IGVFDS7482RDGX",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf0_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS5448FWBW/",
"accession": "IGVFDS5448FWBW",
"aliases": [
"ansuman-satpathy:igvf0_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
"certificate_identifier": "IP115-21",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiplexed_in": [
{
"@id": "/multiplexed-samples/IGVFSM2682GVVD/",
"accession": "IGVFSM2682GVVD",
"status": "released"
}
],
"origin_of": [],
"originated_from": {
"@id": "/in-vitro-systems/IGVFSM7185NSNH/",
"accession": "IGVFSM7185NSNH",
"status": "released"
},
"parts": [],
"pooled_in": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:10:21.944929+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"schema_version": "25",
"sex": "male",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jesse-engreitz/",
"status": "current",
"title": "Jesse Engreitz, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000115/",
"status": "released",
"term_name": "endothelial cell"
},
"taxa": "Homo sapiens",
"time_post_change": 3,
"time_post_change_units": "day",
"uuid": "f6d2bb9f-0d27-4118-9d94-7ac081d54473",
"virtual": false
}