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Status Terminology

On the IGVF Portal, statuses are used to indicate the transition state of a specific object.

Standard Statuses

  • In Progress - Object submission has been initiated.
  • Released - Object is released to the general public. In order to transition to 'released' status, the submitting lab and the data wrangler should be satisfied with the metadata and the quality of the object.
  • Deleted - Object was removed. Removal is only possible for objects that have never been released to the general public.
  • Replaced - Object has been merged with another object. This is usually the case for duplicate objects.
  • Revoked - Object was deemed erroneous or significantly below standards after it had been released.
  • Archived - Object was deemed to be obsolete or outdated in comparison with a more current object.

Used by: documents, images, ontologies, sources, variant, software and software version, phenotypic feature, modification, pages, publications, genes, and treatment.

Shared Statuses

  • Current - Object is up-to-date and in use.
  • Disabled - Object is no longer in use.

Used by: labs, users, and awards.

Accessibility

Objects that have been assigned a status of 'released', 'revoked', 'archived' or 'current' can be viewed by the general public. Objects that have been assigned a status of 'deleted' or 'replaced' can only be viewed by admins and not the general public. Objects with other statuses are accessible to data submitters, but cannot be viewed by the general public.

  • In Progress - Viewable and editable only by submitter and admin.
  • Released - Viewable by the general public, only admin can edit.
  • Deleted - Only admin can view and edit.
  • Replaced - Only admin can view and edit.
  • Revoked - Viewable by the general public, only admin can edit.
  • Archived - Viewable by the general public, only admin can edit.

Standard Statuses

  • Current - Viewable by the general public, only admin can edit.
  • Disabled - Only admin can view and edit.

Standard Statuses

File Upload Statuses

  • Pending - The file is uploading to the Amazon S3 bucket and awaiting format and uniqueness checks.
  • File not Found - The file failed to upload to the Amazon S3 bucket.
  • Invalidated - The file failed format check or uniqueness checks.
  • Validated - The file has successfully uploaded and passed format and uniqueness checks.

Used by: files