{
"@context": "/terms/",
"@id": "/curated-sets/IGVFDS9339IZIB/",
"@type": [
"CuratedSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9339IZIB",
"audit": {
"ERROR": [
{
"category": "inconsistent taxa",
"detail": "Curated set [IGVFDS9339IZIB](/curated-sets/IGVFDS9339IZIB/) has a `taxa` which does not match the `taxa` of its associated `samples`. The taxa of the curated set and associated samples or donors are expected to be matching.",
"level": 60,
"level_name": "ERROR",
"name": "audit_curated_set_mismatched_taxa",
"path": "/curated-sets/IGVFDS9339IZIB/"
}
],
"INTERNAL_ACTION": [
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI5136UFZR](/tabular-files/IGVFFI5136UFZR/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_tabular_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI5136UFZR/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2024-09-03T23:31:26.729987+00:00",
"description": "Barcode to tissue sample mapping",
"file_set_type": "barcodes",
"files": [
{
"@id": "/tabular-files/IGVFFI5136UFZR/",
"accession": "IGVFFI5136UFZR",
"content_type": "barcode to sample mapping",
"creation_timestamp": "2024-09-03T23:34:11.194262+00:00",
"file_format": "tsv",
"file_size": 960,
"href": "/tabular-files/IGVFFI5136UFZR/@@download/IGVFFI5136UFZR.tsv.gz",
"s3_uri": "s3://igvf-files/2024/09/03/24557de2-fd6d-47ab-8036-2486722445d4/IGVFFI5136UFZR.tsv.gz",
"submitted_file_name": "IGVF_B01_barcode_sample_map.tsv.gz",
"upload_status": "validated"
}
],
"input_file_set_for": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"release_timestamp": "2024-09-05T18:27:37.245393+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1676SYRC/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1676SYRC",
"aliases": [
"ali-mortazavi:subpool_b01_13a"
],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "left cerebral cortex",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM1955RVUC/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1955RVUC",
"aliases": [
"ali-mortazavi:subpool_b01_13b"
],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "left cerebral cortex",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM8093RPKR/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8093RPKR",
"aliases": [
"ali-mortazavi:subpool_b01_13c"
],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "left cerebral cortex",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM9603DIDI/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9603DIDI",
"aliases": [
"ali-mortazavi:subpool_b01_13d"
],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "left cerebral cortex",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM6958ESMJ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM6958ESMJ",
"aliases": [
"ali-mortazavi:subpool_b01_13e"
],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "left cerebral cortex",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM6546CQJB/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM6546CQJB",
"aliases": [
"ali-mortazavi:subpool_b01_13f"
],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "left cerebral cortex",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM8722YQAW/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8722YQAW",
"aliases": [
"ali-mortazavi:subpool_b01_13g"
],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "left cerebral cortex",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM2294BOOU/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2294BOOU",
"aliases": [
"ali-mortazavi:subpool_b01_13h"
],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "left cerebral cortex",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"treatments": []
}
],
"schema_version": "8",
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2024-09-03T23:34:11.194262+00:00",
"summary": "Mus musculus barcodes",
"taxa": "Mus musculus",
"uuid": "b96b4b5c-b190-4008-b9fe-9570fd1e5173"
}