IGVFDS8793NHEL

{
    "@context": "/terms/",
    "@id": "/curated-sets/IGVFDS8793NHEL/",
    "@type": [
        "CuratedSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS8793NHEL",
    "aliases": [
        "igvf:igvf_catalog_beta_v0.1_encode_mpra"
    ],
    "assemblies": [
        "GRCh38"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI4245JZEQ](/reference-files/IGVFFI4245JZEQ/) has `upload_status` invalidated. Validation error detail: {\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t462\\t+\\t0.964\\t0.095\\t0.186\\t-1\\t-1]\\nAborting ... found error.\"}. External files are expected to be validated.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI4245JZEQ/"
            },
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI2957SSHD](/reference-files/IGVFFI2957SSHD/) has `upload_status` invalidated. Validation error detail: {\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/2c872464-d47e-4565-b7d5-fb4145fe7f5b/IGVFFI2957SSHD.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t612\\t+\\t2.193\\t0.09\\t0.413\\t-1\\t-1]\\nAborting ... found error.\"}. External files are expected to be validated.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI2957SSHD/"
            },
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI3973KCMA](/reference-files/IGVFFI3973KCMA/) has `upload_status` invalidated. Validation error detail: {\"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2024/05/15/1eafd934-8f07-498d-91b5-b82cb62ad46f/IGVFFI3973KCMA.bed.gz, line=32637]: chrom chr22_KI270879v1_alt not found [chr22_KI270879v1_alt\\t278415\\t278615\\tHepG2_DNasePeakNoPromoter39560\\t543\\t+\\t1.519\\t0.087\\t0.248\\t-1\\t-1]\\nAborting ... found error.\"}. External files are expected to be validated.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI3973KCMA/"
            }
        ]
    },
    "award": {
        "@id": "/awards/Community/",
        "title": "Community"
    },
    "collections": [
        "IGVF_catalog_beta_v0.2",
        "IGVF_catalog_beta_v0.3"
    ],
    "control_for": [],
    "creation_timestamp": "2024-04-02T21:12:16.691152+00:00",
    "description": "MPRA tested regulatory elements",
    "file_set_type": "external data for catalog",
    "files": [
        {
            "@id": "/reference-files/IGVFFI4245JZEQ/",
            "accession": "IGVFFI4245JZEQ",
            "content_type": "regulatory_regions",
            "creation_timestamp": "2024-05-15T19:50:24.644861+00:00",
            "file_format": "bed",
            "file_size": 1085644,
            "href": "/reference-files/IGVFFI4245JZEQ/@@download/IGVFFI4245JZEQ.bed.gz",
            "s3_uri": "s3://igvf-files/2024/05/15/2bddf465-0da5-456d-a052-4b874fc44c1e/IGVFFI4245JZEQ.bed.gz",
            "submitted_file_name": "ENCFF475FKV.bed.gz",
            "upload_status": "invalidated"
        },
        {
            "@id": "/reference-files/IGVFFI2957SSHD/",
            "accession": "IGVFFI2957SSHD",
            "content_type": "regulatory_regions",
            "creation_timestamp": "2024-05-15T19:50:33.190693+00:00",
            "file_format": "bed",
            "file_size": 1088965,
            "href": "/reference-files/IGVFFI2957SSHD/@@download/IGVFFI2957SSHD.bed.gz",
            "s3_uri": "s3://igvf-files/2024/05/15/2c872464-d47e-4565-b7d5-fb4145fe7f5b/IGVFFI2957SSHD.bed.gz",
            "submitted_file_name": "ENCFF769REH.bed.gz",
            "upload_status": "invalidated"
        },
        {
            "@id": "/reference-files/IGVFFI3973KCMA/",
            "accession": "IGVFFI3973KCMA",
            "content_type": "regulatory_regions",
            "creation_timestamp": "2024-05-15T19:50:28.996544+00:00",
            "file_format": "bed",
            "file_size": 1085246,
            "href": "/reference-files/IGVFFI3973KCMA/@@download/IGVFFI3973KCMA.bed.gz",
            "s3_uri": "s3://igvf-files/2024/05/15/1eafd934-8f07-498d-91b5-b82cb62ad46f/IGVFFI3973KCMA.bed.gz",
            "submitted_file_name": "ENCFF802FUV.bed.gz",
            "upload_status": "invalidated"
        }
    ],
    "input_file_set_for": [],
    "lab": {
        "@id": "/labs/community/",
        "title": "External Lab, Community"
    },
    "notes": "https://igvf.atlassian.net/browse/DSERV-93, https://igvf.atlassian.net/browse/WRN-512. This file set was moved from the Cherry lab and award to a community lab and award.",
    "release_timestamp": "2024-07-12T06:44:16.899058+00:00",
    "schema_version": "8",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
        "title": "Meenakshi Kagda"
    },
    "submitted_files_timestamp": "2024-05-15T19:50:24.644861+00:00",
    "summary": "Homo sapiens GRCh38 external data for catalog",
    "taxa": "Homo sapiens",
    "url": "https://www.encodeproject.org/search/?type=FunctionalCharacterizationExperiment&accession=ENCSR405QCT&accession=ENCSR203UFY&accession=ENCSR336MKI",
    "uuid": "db63a466-ff76-4688-ac06-7670178bf97f"
}