{
"@context": "/terms/",
"@id": "/curated-sets/IGVFDS8501OFOY/",
"@type": [
"CuratedSet",
"FileSet",
"Item"
],
"accession": "IGVFDS8501OFOY",
"aliases": [
"igvf:igvf_catalog_beta_v0.1_encode_e2g_hyper_hyper_edges_e2g_full"
],
"assemblies": [
"GRCh38"
],
"audit": {
"WARNING": [
{
"category": "missing dbxrefs",
"detail": "Reference file [IGVFFI5920PUTP](/reference-files/IGVFFI5920PUTP/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
"level": 40,
"level_name": "WARNING",
"name": "audit_external_reference_files",
"path": "/reference-files/IGVFFI5920PUTP/"
},
{
"category": "missing dbxrefs",
"detail": "Reference file [IGVFFI6947TKOD](/reference-files/IGVFFI6947TKOD/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
"level": 40,
"level_name": "WARNING",
"name": "audit_external_reference_files",
"path": "/reference-files/IGVFFI6947TKOD/"
}
]
},
"award": {
"@id": "/awards/ENCODE/",
"title": "ENCODE"
},
"collections": [
"IGVF_catalog_beta_v0.1",
"IGVF_catalog_beta_v0.3",
"IGVF_catalog_beta_v0.2",
"ENCODE"
],
"control_for": [],
"creation_timestamp": "2023-11-02T07:12:51.089003+00:00",
"description": "Encode E2G hyper- and hyper-hyper- edges (ENCODE-E2G-Full)",
"file_set_type": "external data for catalog",
"files": [
{
"@id": "/reference-files/IGVFFI6947TKOD/",
"accession": "IGVFFI6947TKOD",
"aliases": [
"igvf:ENCFF202FID"
],
"assembly": "GRCh38",
"content_type": "regulatory_regions",
"creation_timestamp": "2023-12-05T22:57:51.713946+00:00",
"file_format": "bed",
"file_size": 17435843,
"href": "/reference-files/IGVFFI6947TKOD/@@download/IGVFFI6947TKOD.bed.gz",
"s3_uri": "s3://igvf-files/2023/12/05/a5ac1eb5-99aa-4566-9e08-be0b539e69f7/IGVFFI6947TKOD.bed.gz",
"submitted_file_name": "ENCFF202FID.bed.gz",
"upload_status": "validated"
},
{
"@id": "/reference-files/IGVFFI5920PUTP/",
"accession": "IGVFFI5920PUTP",
"aliases": [
"igvf:ENCFF128MZW"
],
"assembly": "GRCh38",
"content_type": "regulatory_regions",
"creation_timestamp": "2023-12-05T22:56:09.150841+00:00",
"file_format": "bed",
"file_size": 13208714,
"href": "/reference-files/IGVFFI5920PUTP/@@download/IGVFFI5920PUTP.bed.gz",
"s3_uri": "s3://igvf-files/2023/12/05/26946112-9f73-49ee-9543-8fde89d45a91/IGVFFI5920PUTP.bed.gz",
"submitted_file_name": "ENCFF128MZW.bed.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/encode/",
"title": "ENCODE Project, NHGRI"
},
"notes": "https://igvf.atlassian.net/browse/DSERV-291. This file set was moved from the Cherry lab and award to a community lab and award.",
"release_timestamp": "2023-12-07T06:00:11.039543+00:00",
"schema_version": "8",
"status": "released",
"submitted_by": {
"@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
"title": "Meenakshi Kagda"
},
"submitted_files_timestamp": "2023-12-05T22:56:09.150841+00:00",
"summary": "Homo sapiens GRCh38 external data for catalog",
"taxa": "Homo sapiens",
"url": "https://www.encodeproject.org/search/?type=Annotation&submitted_by.title=Andreas+Roman+Gschwind&lab.title=Jesse+Engreitz%2C+Stanford&software_used.software.name=distal-regulation-encode_re2g&files.accession=ENCFF128MZW&files.accession=ENCFF202FID",
"uuid": "48d4acc1-4927-4671-be9d-53a84d653589"
}