IGVFDS5798ODGM

released
1{
2    "@context": "/terms/",
3    "@id": "/curated-sets/IGVFDS5798ODGM/",
4    "@type": [
5        "CuratedSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS5798ODGM",
10    "audit": {
11        "INTERNAL_ACTION": [
12            {
13                "category": "missing publication",
14                "detail": "Curated set [IGVFDS5798ODGM](/curated-sets/IGVFDS5798ODGM/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
15                "level": 30,
16                "level_name": "INTERNAL_ACTION",
17                "name": "audit_file_set_missing_publication",
18                "path": "/curated-sets/IGVFDS5798ODGM/"
19            },
20            {
21                "category": "mismatched status",
22                "detail": "Released reference file [IGVFFI4777RDZK](/reference-files/IGVFFI4777RDZK/) has in progress subobject document [7143685b-1a3c-4d28-9b74-21458790ecad](/documents/7143685b-1a3c-4d28-9b74-21458790ecad/).",
23                "level": 30,
24                "level_name": "INTERNAL_ACTION",
25                "name": "audit_item_status",
26                "path": "/reference-files/IGVFFI4777RDZK/"
27            }
28        ]
29    },
30    "award": {
31        "@id": "/awards/Community/",
32        "title": "Community"
33    },
34    "control_for": [],
35    "creation_timestamp": "2024-12-10T18:32:20.611339+00:00",
36    "description": "Mus musculus genome reference files from GENCODE release M36",
37    "file_set_type": "genome",
38    "files": [
39        {
40            "@id": "/reference-files/IGVFFI7254HLWI/",
41            "accession": "IGVFFI7254HLWI",
42            "content_type": "genome reference",
43            "controlled_access": false,
44            "creation_timestamp": "2024-12-10T18:54:45.082298+00:00",
45            "file_format": "fasta",
46            "file_size": 774679149,
47            "href": "/reference-files/IGVFFI7254HLWI/@@download/IGVFFI7254HLWI.fasta.gz",
48            "s3_uri": "s3://igvf-files/2024/12/10/2a4b5baa-d729-4cc2-9687-eca5c1fa60b9/IGVFFI7254HLWI.fasta.gz",
49            "status": "released",
50            "submitted_file_name": "/home/ubuntu/meenakshi/genomes/GRCm39.genome.fa.gz",
51            "upload_status": "validated"
52        },
53        {
54            "@id": "/reference-files/IGVFFI5842FWGQ/",
55            "accession": "IGVFFI5842FWGQ",
56            "content_type": "transcriptome reference",
57            "controlled_access": false,
58            "creation_timestamp": "2024-12-10T18:54:54.897022+00:00",
59            "file_format": "gtf",
60            "file_size": 36922555,
61            "href": "/reference-files/IGVFFI5842FWGQ/@@download/IGVFFI5842FWGQ.gtf.gz",
62            "s3_uri": "s3://igvf-files/2024/12/10/36b59317-b5dc-42b4-90da-e25bb4702c57/IGVFFI5842FWGQ.gtf.gz",
63            "status": "archived",
64            "submitted_file_name": "/home/ubuntu/meenakshi/genomes/gencode.vM36.chr_patch_hapl_scaff.annotation.gtf.gz",
65            "transcriptome_annotation": "GENCODE M36",
66            "upload_status": "validated"
67        },
68        {
69            "@id": "/reference-files/IGVFFI4777RDZK/",
70            "accession": "IGVFFI4777RDZK",
71            "content_type": "transcriptome reference",
72            "controlled_access": false,
73            "creation_timestamp": "2025-03-17T23:05:33.583037+00:00",
74            "file_format": "gtf",
75            "file_size": 39833956,
76            "href": "/reference-files/IGVFFI4777RDZK/@@download/IGVFFI4777RDZK.gtf.gz",
77            "s3_uri": "s3://igvf-files/2025/03/17/0ab02196-d7fe-464f-b159-8a553f49df94/IGVFFI4777RDZK.gtf.gz",
78            "status": "released",
79            "submitted_file_name": "IGVFFI5842FWGQ_updated_chromosome_names.gtf.gz",
80            "transcriptome_annotation": "GENCODE M36",
81            "upload_status": "validated"
82        }
83    ],
84    "input_for": [],
85    "lab": {
86        "@id": "/labs/community/",
87        "title": "External Lab, Community"
88    },
89    "release_timestamp": "2024-12-13T03:59:13.633091+00:00",
90    "schema_version": "8",
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
94        "title": "Meenakshi Kagda"
95    },
96    "submitted_files_timestamp": "2024-12-10T18:54:45.082298+00:00",
97    "submitter_comment": "This FilesSet does NOT the official IGVF mouse GRCm39 genome version; it exists only for legacy submissions.  It does contain the current GENCODE transcriptome file.",
98    "summary": "Mus musculus GENCODE M36 genome",
99    "taxa": "Mus musculus",
100    "transcriptome_annotations": [
101        "GENCODE M36"
102    ],
103    "url": "https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M36/",
104    "uuid": "aace4c29-b10d-4f4c-847a-5b76b200c91a"
105}