IGVFDS5645BMIY

{
    "@context": "/terms/",
    "@id": "/curated-sets/IGVFDS5645BMIY/",
    "@type": [
        "CuratedSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS5645BMIY",
    "aliases": [
        "igvf:igvf_catalog_beta_v0.1_mouse_encode_ccre"
    ],
    "assemblies": [
        "GRCm39",
        "mm10"
    ],
    "audit": {
        "WARNING": [
            {
                "category": "missing dbxrefs",
                "detail": "Reference file [IGVFFI8753TTYC](/reference-files/IGVFFI8753TTYC/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_external_reference_files",
                "path": "/reference-files/IGVFFI8753TTYC/"
            },
            {
                "category": "missing dbxrefs",
                "detail": "Reference file [IGVFFI2990JTPS](/reference-files/IGVFFI2990JTPS/) is an external file, but does not have identifier(s) from an external resource listed in `dbxrefs`. Reference files uploaded from external resources are expected to have external identifiers in dbxrefs.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_external_reference_files",
                "path": "/reference-files/IGVFFI2990JTPS/"
            },
            {
                "category": "upload status not validated",
                "detail": "Reference file [IGVFFI2990JTPS](/reference-files/IGVFFI2990JTPS/) has `upload_status` invalidated. Validation error detail: {\"validate_files\": \"mm10 is not a valid assembly. Valid assemblies: ['GRCh38', 'GRCm39']\"}. External files are expected to be validated.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_upload_status",
                "path": "/reference-files/IGVFFI2990JTPS/"
            }
        ]
    },
    "award": {
        "@id": "/awards/ENCODE/",
        "title": "ENCODE"
    },
    "collections": [
        "IGVF_catalog_beta_v0.3",
        "IGVF_catalog_beta_v0.2",
        "ENCODE"
    ],
    "control_for": [],
    "creation_timestamp": "2024-02-24T08:57:06.617269+00:00",
    "description": "Mouse ENCODE cCRE",
    "file_set_type": "external data for catalog",
    "files": [
        {
            "@id": "/reference-files/IGVFFI2990JTPS/",
            "accession": "IGVFFI2990JTPS",
            "aliases": [
                "igvf:ENCFF167FJQ"
            ],
            "assembly": "mm10",
            "content_type": "regulatory_regions",
            "creation_timestamp": "2024-02-24T09:00:10.952521+00:00",
            "file_format": "bed",
            "file_size": 13153330,
            "href": "/reference-files/IGVFFI2990JTPS/@@download/IGVFFI2990JTPS.bed.gz",
            "s3_uri": "s3://igvf-files/2024/02/24/e858567a-47a8-4905-83fd-551ac1a8d960/IGVFFI2990JTPS.bed.gz",
            "submitted_file_name": "ENCFF167FJQ.bed.gz",
            "upload_status": "invalidated"
        },
        {
            "@id": "/reference-files/IGVFFI8753TTYC/",
            "accession": "IGVFFI8753TTYC",
            "aliases": [
                "igvf:ENCFF167FJQ_lifted_over_GRCm39"
            ],
            "assembly": "GRCm39",
            "content_type": "regulatory_regions",
            "creation_timestamp": "2024-04-02T20:48:12.685438+00:00",
            "file_format": "bed",
            "file_size": 13149638,
            "href": "/reference-files/IGVFFI8753TTYC/@@download/IGVFFI8753TTYC.bed.gz",
            "s3_uri": "s3://igvf-files/2024/04/02/c69a4e41-fd7d-485b-a37e-d6b33a20f1d7/IGVFFI8753TTYC.bed.gz",
            "submitted_file_name": "ENCFF167FJQ_mm39.bed.gz",
            "upload_status": "validated"
        }
    ],
    "input_for": [],
    "lab": {
        "@id": "/labs/encode/",
        "title": "ENCODE Project, NHGRI"
    },
    "notes": "https://igvf.atlassian.net/browse/DSERV-356; https://igvf.atlassian.net/browse/WRN-481. This file set was moved from the Cherry lab and award to a community lab and award.",
    "release_timestamp": "2024-04-05T23:04:37.145369+00:00",
    "schema_version": "8",
    "status": "released",
    "submitted_by": {
        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
        "title": "Meenakshi Kagda"
    },
    "submitted_files_timestamp": "2024-02-24T09:00:10.952521+00:00",
    "summary": "Mus musculus GRCm39 mm10 external data for catalog",
    "taxa": "Mus musculus",
    "uuid": "eb9bad34-9bb4-4ab2-b3c6-da3ab10b6228"
}